Pairwise Alignments

Query, 519 a.a., ABC transporter substrate binding protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 535 a.a., Periplasmic dipeptide transport protein from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  153 bits (387), Expect = 1e-41
 Identities = 136/520 (26%), Positives = 226/520 (43%), Gaps = 61/520 (11%)

Query: 1   MMKTGVLLL-TSLIGL-VAQPVMAKNLTIGLSGTVTSIDPHFYNASPN-NAIAMQIFDRL 57
           + K+G+L L  SL+ + VA  V AK L     G+    +P  + +    +A ++ +++RL
Sbjct: 5   LKKSGMLKLGLSLVAMTVAASVQAKTLVYCSEGSPEGFNPQLFTSGTTYDASSVPLYNRL 64

Query: 58  TE-RTAEGRLVEGLATKWDTVSETK-WRFALRDGVKWHDGKPF------TSDDVIFTLDR 109
            E +     ++ GLA KW+   + K + F LR GVKWHD K F       +DDV+F+ DR
Sbjct: 65  VEFKIGTTEVIPGLAEKWEVSEDGKTYTFHLRKGVKWHDNKEFKPTRELNADDVVFSFDR 124

Query: 110 AGSVPN-----SPGGFG-----GFMRNIASVEADGDNAV-IISTKAPAPTLPGDLAN--I 156
             +  N     S G +      G    I+ V+   DN V  + T+  AP L  DLA    
Sbjct: 125 QKNAQNPYHKVSGGSYEYFEGMGLPELISEVKKVDDNTVQFVLTRPEAPFL-ADLAMDFA 183

Query: 157 AIVSRHAGEGADTA------DYNSGKAAIGTGAFRLTTFKQGIEVGLERNPDWWGKKVAW 210
           +I+S+   +    A      D N     IGTG F+L  +++   +  +    +WG K   
Sbjct: 184 SILSKEYADAMMKAGTPEKLDLNP----IGTGPFQLQQYQKDSRIRYKAFDGYWGTKPQI 239

Query: 211 DHATYRMISSASARTTAALAGDVDVIDAPAATDIARFKTTANLSFVSTPGLRVIYLAPST 270
           D   + +   AS R       +  V+  P   DIAR K   +++ +  PGL V YL+ + 
Sbjct: 240 DTLVFSITPDASVRYAKLQKNECQVMPYPNPADIARMKQDKSINLMEMPGLNVGYLSYN- 298

Query: 271 SGDAWKAFVKGPKGEALDNNPLADPRVRNALSEAINREGIVDKIMEGTATASGQWLPKGA 330
                           +   PL D +VR AL+ A+N++ I+  + +G   ++   +P   
Sbjct: 299 ----------------VQKKPLDDVKVRQALTYAVNKDAIIKAVYQGAGVSAKNLIPPTM 342

Query: 331 FSYTPDIQPPKPDAAGAKKLLADAGYPDGFQL---TVHVPNDRYPNAPAVVQAVAQMWTR 387
           + Y  D+Q    D   AK LL +AG   GF +    + V     PNA  + + +   W +
Sbjct: 343 WGYNDDVQDYTYDPEKAKALLKEAGLEKGFSIDLWAMPVQRPYNPNARRMAEMIQADWAK 402

Query: 388 IGVKTNVEALPWTTFSSR--KSEFAMKLLGLGNATYDASSMLVNVLGTVDPKRGLGAAND 445
           +GV+  +    W  +  R    E    ++G      D  +    +      ++G   +N 
Sbjct: 403 VGVQAKIVTYEWGEYLKRAKDGEHQTVMMGWTGDNGDPDNFFATLFSCAASEQG---SNY 459

Query: 446 SGYSNPALDDLVSKAMMIYDDKAREAALIEAVKVAITDGA 485
           S +     +DL+  A    DD  +   L +  +V + D A
Sbjct: 460 SKWCYKPFEDLIQPARAT-DDHNKRVELYKQAQVVMHDQA 498