Pairwise Alignments

Query, 519 a.a., ABC transporter substrate binding protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 535 a.a., oligopeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score =  145 bits (365), Expect = 5e-39
 Identities = 142/527 (26%), Positives = 231/527 (43%), Gaps = 53/527 (10%)

Query: 3   KTGVLLLTSLIGLVAQPVMAKNLTIGLSGTVTSIDPHFYNASPN--NAIAMQIFDR--LT 58
           + G LL +  +G+V+ P +  N     SG   ++     ++ P     IA   ++   ++
Sbjct: 9   RRGFLLASVALGVVSLPGLKLNAAEPASGGTATL---LISSEPPVLTTIAHTAYNSVYIS 65

Query: 59  ERTAEGRLVEG--------LATKWDTVSE-TKWRFALRDGVKWHDGKPFTSDDVIFTLDR 109
            +  EG L           LA  WD  ++  ++ F LR GVKWHDGKPFTS DV F++  
Sbjct: 66  PKVTEGLLTYDFDLNPKPLLAKSWDVSADGLRYTFNLRPGVKWHDGKPFTSADVAFSIST 125

Query: 110 AGSVPNSPGGFGGFMRNIASVEADGDNAVIISTKAPAPTLPGDL--ANIAIVSRHAGEGA 167
              V   P G   F+ N+ +VE   +   ++    PAP L   L  A   IV +H  EG 
Sbjct: 126 IKEV--HPRGRNTFL-NLTAVETPNELTAVLVLSKPAPYLITALAAAETPIVPKHLYEGT 182

Query: 168 DTADYNSGKAAIGTGAFRLTTFKQGIEVGLERNPDWW-GKKVAWDHATYRMISSASARTT 226
              +     A IGTG F+   + +G  +  ERN D+W   +   D    R I  ASAR  
Sbjct: 183 KVTENPVNLAPIGTGPFKFKEWVRGSHIVFERNADYWDAPRPYLDRLIVRFIPDASARAI 242

Query: 227 AALAGDVDVIDAP--AATDIARFKTTANLSFVSTPGLRVIYLAPSTSGDAWKAFVKGPKG 284
           A   G++D+  +   A +D+ R K   +L F              T+G  +   +   + 
Sbjct: 243 AIETGEIDLAPSTPVAYSDLDRLKELPSLGF-------------DTNGYQYTNSISRVEF 289

Query: 285 EALDNNPLADPRVRNALSEAINREGIVDKIMEG-TATASGQWLPKGAFSYTPDIQPPKPD 343
             L+ +   D RVR A +  I+R  I + +  G  AT +G   PK    +  D++    D
Sbjct: 290 N-LEKDVFKDVRVRRAFAHVIDRNVIFNTVNFGYGATIAGPINPKLTKWFVNDLKTYPID 348

Query: 344 AAGAKKLLADAGYPDG-----FQLTV-HVPN-DRYPNAPAVVQAVAQMWTRIGVKTNVEA 396
              A+ LL +AGY  G     F+L + +VP+ + YP        + Q   ++GV   V  
Sbjct: 349 LKAAEALLDEAGYKRGADGIRFKLNLDYVPSTEAYPRG---ADYIRQALAKVGVDVTVRT 405

Query: 397 LPWTTFSSR---KSEFAMKLLGLGNATYDASSMLVNVLGTVDPKRGLGAANDSGYSNPAL 453
             + T++ R     +F     G+ N  +D +  +  +  + + K+G+  +N + YSNP +
Sbjct: 406 QDFATYTKRIYTDRDFDFAYEGMSN-LFDPTVGVQRLYWSKNFKKGVPFSNGAAYSNPKV 464

Query: 454 DDLVSKAMMIYDDKAREAALIEAVKVAITDGAIIPLYQQSNAWVLRK 500
           D L+  A +  D   R A   E  ++ + D   I +       +  K
Sbjct: 465 DALLEAAAIEIDPDKRVAQWKEIQQILVEDVPAIDIVAAPEITIFNK 511