Pairwise Alignments

Query, 298 a.a., ABC transporter membrane spanning protein (spermidine/putrescine) from Agrobacterium fabrum C58

Subject, 291 a.a., Spermidine/putrescine transport system permease protein PotB from Xanthobacter sp. DMC5

 Score =  126 bits (317), Expect = 5e-34
 Identities = 81/272 (29%), Positives = 135/272 (49%), Gaps = 6/272 (2%)

Query: 15  PLPSLSAGLRAAAPVTILLLLGFLAPLLTVAAYAFATPK-SFTVFRSFTFANFAVIFDAS 73
           PL + SA L    P+ ++  +GFL P++ +   +F   + S  +   +    +      S
Sbjct: 16  PLGTASALL---LPIAVVNAIGFLWPVVNLLKMSFREAQASGALGAGYNLDTWTNALTDS 72

Query: 74  NTVWMSFAWSIAYALATVILLAVIAYPIAYGLNRMFGRWSGLVGVLFVFPLFVSENVRLY 133
            T+ +    S+  +L   +L  + +YPIA  L+R  G W  ++ VL V PL  S  VR Y
Sbjct: 73  FTLEL-ITNSVGVSLLITVLTLIASYPIALYLHRSTGTWRTMLMVLVVAPLLTSAVVRTY 131

Query: 134 GWVLFFIKNGVLDGGLKWLGFSGGPELLYTPGAILFGMIYVYLPFMLFPMSLGIAMIPRD 193
           GW+      G++   L  LG +  P L++    ++ G+  + +P+M+  +  G   +   
Sbjct: 132 GWIAILSDRGLVANALMALGMAEPPRLMFNLTGVVIGLTEILMPYMILALLSGFGRLDPR 191

Query: 194 LVDAARDLGADRLMIWREIELPLAMPGILIGMLLTFVLGAGAIAESKILGGQSVITIAQD 253
           L +AA  LGA  L  +  + LPL  PG+ +G LL FVL   +    K+LGG  V  +A +
Sbjct: 192 LEEAALTLGASPLKTFWRVVLPLTAPGMALGGLLCFVLAISSFVTPKLLGGGRVFLLATE 251

Query: 254 IEIAFTYAQNWPLGSALALLLVAIVS-GLALY 284
           I        NWPL +AL+++++ +    LALY
Sbjct: 252 IYDQAIVTLNWPLAAALSMIVLVVFGISLALY 283