Pairwise Alignments

Query, 345 a.a., glycine betaine transporter periplasmic subunit from Agrobacterium fabrum C58

Subject, 339 a.a., Glycine betaine/L-proline transport substrate-binding protein ProX (TC 3.A.1.12.1) from Variovorax sp. SCN45

 Score =  188 bits (477), Expect = 2e-52
 Identities = 115/338 (34%), Positives = 168/338 (49%), Gaps = 16/338 (4%)

Query: 10  LLASTIVAASLPVLSSASAAELPGDGKTIRFAQSDSLGANYVVAKIVTKGFEALGYKVK- 68
           LLA   VA     L++ +  +LPG G T+   +S SL        +V +  E LGY V+ 
Sbjct: 12  LLALAFVACGATALATGN--DLPGKGVTVLPLKS-SLAEEAFQTLLVMRALEKLGYTVEP 68

Query: 69  LSTVNTTLFFQAVAQGDLDIATDINFPQREPGFRKVADKADMIGKGLIEGGGINGYLIDK 128
           +  +       A+A GD    T+         ++     A +  KG+   G + GYLID+
Sbjct: 69  MKDLEPATEHLAIANGDATFMTNHWSLLHADFYKNSGGDAKLWRKGVYSDGAVQGYLIDR 128

Query: 129 KTADAYNIKTLDQMKDPKIAALFGTDG--KADLINCDPGWSCGDVVEYQLDKFGLKDTVK 186
           KTA+ Y I ++ Q+KDP IA LF  DG  KADL  C+PGW C   +E  L  + L+DTV 
Sbjct: 129 KTAEQYGITSIAQLKDPAIAKLFDADGDGKADLTGCNPGWGCELAIENHLTAYQLRDTVT 188

Query: 187 SVRGKYEALMVEAVARAKRGEPVFFYAWSPSWMNKALQPGKDVVWLPTPFDALPPSVPSS 246
             +G Y ALM + +AR K+ +PV +Y W+P W++  L+PG DVVWL  PF        SS
Sbjct: 189 HKQGSYAALMADTIARFKQEKPVLYYTWTPYWVSAVLRPGADVVWLQVPF--------SS 240

Query: 247 GTNAVANVEGCAGAANPCRMAMAAWNWTAVGNKEFLKENPEVKSFVENMSFPLSTWSSWE 306
                 NV+      N       A     V N+ F+++NP      E M  P+S  ++  
Sbjct: 241 SQGDAGNVD--TQLPNGKNYGFQANQEQIVANRAFVEKNPAAGKLFEVMKLPISDINAQN 298

Query: 307 QAISQKGGSDATVRGLSDAWLSENKALLDGWITAAKSA 344
             +SQ   +   V   +D W+  ++ L DGWI  A++A
Sbjct: 299 LRMSQGANTQQDVERHTDGWIKAHQELFDGWIAQARAA 336