Pairwise Alignments

Query, 452 a.a., efflux protein from Agrobacterium fabrum C58

Subject, 511 a.a., multidrug efflux transport system - permease subunit from Pseudomonas putida KT2440

 Score = 62.0 bits (149), Expect = 4e-14
 Identities = 61/267 (22%), Positives = 108/267 (40%), Gaps = 7/267 (2%)

Query: 3   AGSPATPEHALTLRIAYALVAILVGLIGGLGNALVMVNITELKTGLALSSVQAAWLPTAY 62
           A +  TP   L   I  +L   +  L   + N    V +  +   L +S  Q  W+ T++
Sbjct: 5   AAAQFTPPSLLLTTIGLSLATFMQVLDTTIAN----VALPTISGNLGVSYEQGTWVITSF 60

Query: 63  AMTNISANLLLIKFRQQYGLCVFTLVALGLYALLSLTYLLTADHWLTLAIRAASGFVAAA 122
           A++N  A  L     +++G     + A  L+ L S    +       +  R   G VA  
Sbjct: 61  AVSNAIALPLTGWLSRRFGEVKLFIWATLLFVLASFLCGIAQSMPELVGFRVLQGVVAGP 120

Query: 123 LTPLSLFYVMQALPGRWRVRGLILGLGISQCAFPLATVISPWLSISSHWQSIFLLEAGLA 182
           L P++   ++   P   R   L L   ++  A     ++  W++ S  W  IF +   + 
Sbjct: 121 LYPMTQTLLIAVYPPAKRGMALALLAMVTVVAPIAGPILGGWITDSYSWPWIFFINVPIG 180

Query: 183 FLSLAAVGT-FRLPPAERERVFEPSDFLTFLLLASSLALIAAVLGLGRLEGWFKAPWIIW 241
             + A V    R  P    R  +P D++  L L   +  +  VL  G    WF++ +II 
Sbjct: 181 LFAAAVVRQQMRTRPVVTSR--QPMDYIGLLTLIIGVGALQVVLDKGNDLDWFESSFIIV 238

Query: 242 FLSLALPMIIAALILEKGRTVPLLNLR 268
              +++  +   +I E     P++NLR
Sbjct: 239 GSLISVVFLAVFVIWELTDRHPVVNLR 265