Pairwise Alignments

Query, 452 a.a., efflux protein from Agrobacterium fabrum C58

Subject, 523 a.a., drug resistance transporter, EmrB/QacA subfamily from Enterobacter asburiae PDN3

 Score = 58.2 bits (139), Expect = 6e-13
 Identities = 63/283 (22%), Positives = 118/283 (41%), Gaps = 22/283 (7%)

Query: 18  AYALVAILVGLIGGLGNALVMVNITELKTGLALSSVQAAWLPTAYAMTN-----ISANLL 72
           A A+V  L   +  L   +V V +  +   L+ S  ++ W+ T+Y + N     ISA L 
Sbjct: 17  AVAIVVTLAVFMEILDTTIVNVALPHVAGSLSSSYDESTWVLTSYLVANGIVLPISAFLS 76

Query: 73  LIKFRQQYGLCVFTLVALGLYALLSLTYLLTADHWLTLAIRAASGFVAAALTPLSLFYVM 132
            +  R+Q     F L+ + ++ + S    +  + W  +  R   GF    L P     ++
Sbjct: 77  RVFGRKQ-----FFLICIVMFTVCSFLCGIATELWQIILFRVMQGFFGGGLQPTQQSVLL 131

Query: 133 QALPGRWRVRGLILGLGISQCAFPLATVISP----WLSISSHWQSIFLLEAGLAFLSLAA 188
                  R +      G+S  A  +A V+ P    W++ +  W+ +F +   +  +++ A
Sbjct: 132 DYFKPEDRGK----AFGLSSIAIIVAPVLGPTLGGWITDNYSWRWVFFINIPVGIVTVLA 187

Query: 189 VGTFRLPPAERERVFE--PSDFLTFLLLASSLALIAAVLGLGRLEGWFKAPWIIWFLSLA 246
           +      P    +  E    D+    L+A  L  +  +L  G  E WF + +I  F  L 
Sbjct: 188 IYQLLEDPPWESKSKEKLTIDWTGIGLIALGLGCLQVMLDRGEDEDWFYSNFIRTFGVLT 247

Query: 247 LPMIIAALILEKGRTVPLLNLRWLGSDDIARLAFAILMARVVL 289
           L  II A+        P+++L  +   + A    ++LMA + +
Sbjct: 248 LVGIIGAIYWLVYARKPVVDLHCMKDRNFA--ISSLLMAGMAM 288