Pairwise Alignments

Query, 397 a.a., efflux protein from Agrobacterium fabrum C58

Subject, 378 a.a., Multidrug efflux RND membrane fusion protein MexC from Pseudomonas putida KT2440

 Score = 99.8 bits (247), Expect = 1e-25
 Identities = 96/340 (28%), Positives = 154/340 (45%), Gaps = 34/340 (10%)

Query: 47  EEVVLAT---GVLEPLELVRVGAQASGRVERLSVEVGDVVEAGQLVAEIDSQTRRNTLRD 103
           E+V LA    G +EP+ +  V A+  G V     E G  V+AG ++ +ID    +  L  
Sbjct: 46  EQVALAAELPGRVEPMRVAEVRARVPGIVLHKRFEEGADVKAGDVLFQIDPAPFKAALAR 105

Query: 104 REAALANIRAVHAARMAGLVKARKDFERERELLAGGSIPRAQYDAAVATLDSARAEVQAL 163
            EA LA  +AV         +A+   +R   L+   ++ +  +D+A A L SA A V++ 
Sbjct: 106 AEADLARAQAVQQ-------EAQARVKRYEPLVKIEAVSQQDFDSATAELRSAGAAVRS- 157

Query: 164 DAQITQAQVALASADIELGYTRITAPIAGTVVAIVTEEGQTVNALQTAPTIVMIARLDRM 223
                 AQ  + +A + LGY  +TAPI+G +   +  EG  V   + A  +  I +LD +
Sbjct: 158 ------AQADVQAARLNLGYATVTAPISGRIGRALATEGALVGQGE-ATLMARIQQLDPI 210

Query: 224 KVRADISEADVVRVRRGMPVWFSILGDPKRRFDGELRQVEPAPASIANDGSSAARELGST 283
            +    S AD +R+R+        L D     D +    +         G     ++   
Sbjct: 211 YIDFTQSAADALRLRQA-------LKDGALSADSQRLTAQVEGTDFQRSGELMFTDVSVD 263

Query: 284 KGA--VYYTGLIDVANADGVLRPSMTAQVSIVLSRVSGAVLAPLSAVEGAPRAGDTARIR 341
           +G   V   G  D  NADG L P M  +V       + A+L P  AV+     G   + R
Sbjct: 264 RGTGQVILRGRFD--NADGTLLPGMYVRVRTPQGTDNHAILVPQRAVQ----RGSDGQAR 317

Query: 342 VLDAASEV-QIRQVQVGVDNGADIQILSGLQAGETIVLGA 380
           VL A + + + R V+ GV  G+  QI  GL+ G+ +++G+
Sbjct: 318 VLVATNGIAEARAVRTGVMQGSRWQITEGLEPGDQVIVGS 357