Pairwise Alignments

Query, 757 a.a., type IV secretion protein AvhB4 from Agrobacterium fabrum C58

Subject, 825 a.a., Conjugative transfer protein TrbE from Variovorax sp. SCN45

 Score =  181 bits (459), Expect = 1e-49
 Identities = 168/678 (24%), Positives = 295/678 (43%), Gaps = 54/678 (7%)

Query: 39  AIWTHLIRRRDSDYPGGTFATPFSASLNEKYRERMAREHL---FRNDLYLTVLWSPARSP 95
           A++    RR  ++YP   F  P S  ++E+   R A E L   F +  +LT+++ P    
Sbjct: 74  ALFIEAERRPAANYPHSEFPEPLSWLVDEE--RRAAFEDLGNHFESGYHLTLVYLPPEEA 131

Query: 96  ADKAGKLLSYLRRSKRLDTELDEEALKELKDKVVIVMAGLRSFEPRLLSLYEQEGMLFSE 155
             +A  LL   R ++ +D      A     +++  ++ G+    P +  L + + + +  
Sbjct: 132 RARAAGLLYENRLTEGVDWRERLTAFIAETERIFDLLDGVM---PEIAWLDDSQTLTY-- 186

Query: 156 PSEVLHQLVGGRRERVPLTEGRV-ASAIYSDRVIIGRETIEIRHEAESRFAGMLSFKEYP 214
               LH  V  RR RV + E      A+ +D  +IG     +      +   ++S + +P
Sbjct: 187 ----LHATVSTRRYRVGVPEVPFHLDALLADAPLIGG----LAPMLGDQHLRVVSVRGFP 238

Query: 215 ARTRTGMLDGVLNSPFELILSQSFCFVSKADARVIMGRKQNQLVSSGDK----------- 263
             T  G+LD +    F    S  F  + KA+A   + R + Q  +               
Sbjct: 239 ISTWPGILDDLNRLGFAYRWSTRFLCLDKAEAEKELARLRRQWFAKRKNVIALLRETIFQ 298

Query: 264 ---------AASQIDELDDAMDDLESNRFVLGEHHLTLSVFATTLKELTDNLAKVRASLT 314
                    A+++  + D A+ +L S++   G    T++V         + L +V   + 
Sbjct: 299 QESPLVDTDASNKATDADAALQELGSDQVAFGYVTATVTVMDADAAVANEKLRRVERVIQ 358

Query: 315 NGGAVVAREDLGLEAAWWAQLPGNFRYRARSGAISSKNFAALSPFHSYPIG-QKDGNEWG 373
             G V   E L    AW + +PG+     R   +S+ N A L P  +   G +K+ +  G
Sbjct: 359 GRGFVTIPETLNAVDAWLSSIPGHAYANVRQPIVSTLNLAHLMPVSAVWAGPEKNAHLDG 418

Query: 374 PAVALLKTASGSPYYFNLHYGDLGNTFMCGPSGAGKTVIVNFMLSQLEKHDPHVVF-FDK 432
           P + + +T   +P+    H GD+G+T + GP+G GK+V++  +  Q  ++    +F FD 
Sbjct: 419 PPLIVTRTEGATPFRLVTHIGDVGHTLVAGPTGMGKSVLLATLAMQFRRYRGSRIFAFDM 478

Query: 433 DRGADLYVRAAGGTYLPLKNGVPTGCAPLKALNLTPENKVFLARWIGKLVGSGARELTVT 492
            R     +   GG +  L         PL  ++     + + A WI   +   +  +   
Sbjct: 479 GRSMRATILGLGGEHYDLGMDGEIAFQPLARID-REGYRTWAAEWIEGRLRHESVAVGPE 537

Query: 493 ELRDISGAIDGLADLPAERRTIGALRAFLNNTDPEGIAARLRRWEEGGPLGWVFDNVIED 552
           E   I  A+  LA  P E+RT+  L   L +     +   L  +  GG  G + D     
Sbjct: 538 EKAAIWSALGSLAGAPMEQRTMTGLSVLLQSN---ALRQALAPYVLGGAHGKLLD----- 589

Query: 553 IGFGDFGGSGKFIGYDMTDFLDNEEIRIPLMAYLFHRVEQVIDGRRIIIVIDEFWKALQD 612
               D  G+G    ++M + + ++   + ++ YLF R ++  DG   ++++DE W  L D
Sbjct: 590 -ADSDRLGAGSVQCFEMEELMHSKAAVMAVLHYLFARFDERFDGAPTLLILDEAWLFLDD 648

Query: 613 EGFRDLAQNKLKTIRKQNGLMLFATQSPRDALNSPIAHTIIEQCPTQIFLPNSRGNHAD- 671
             F    +  LKT+RK+N  ++FATQS  D  +S IA  IIE C ++IFLPN +      
Sbjct: 649 PVFAARIRQWLKTLRKKNVSVIFATQSLADIKDSSIAPAIIESCASRIFLPNPQATEPQI 708

Query: 672 --YVDGFKLTEREYELIA 687
               +GF L  R+ E++A
Sbjct: 709 RTIYEGFGLNLRQIEIVA 726