Pairwise Alignments

Query, 360 a.a., ABC transporter substrate binding protein (mannopine) from Agrobacterium fabrum C58

Subject, 347 a.a., putative spermidine/putrescine-binding periplasmic protein from Pseudomonas putida KT2440

 Score =  114 bits (285), Expect = 4e-30
 Identities = 93/344 (27%), Positives = 162/344 (47%), Gaps = 19/344 (5%)

Query: 23  ALMFALGLEKASAEQRVVIATTGGTYEKALREAWFEPFTKATGIKVVTVSGTDAEKRAKV 82
           A + ALGL  A A Q++V+   GG  +KA  EA F+PF    G +++        + A++
Sbjct: 12  AALLALGLSNAQAAQQMVVVGYGGAGQKAQDEAIFKPFVAQDGSQLIQSEYNG--EMARI 69

Query: 83  TAMVQTGNVTWD-LYLDG-EIQAGSDAHFAITEDLSDFCMQFINSTDLLADSCTRGGAKL 140
             M  TGNV WD + ++G ++  G D    I E L     +  ++ +L+  +    G+  
Sbjct: 70  QVMADTGNVDWDVVQIEGPDLMRGCDE--GIYERLD--WQRLGHAAELIPAAAQDCGSAA 125

Query: 141 QSTSTLLAYKLNENGSNPQTWADMWDLAKFPGARSFPNFDDPWRVLAAALLADGVPREKL 200
              S  +AY  ++    P +WAD WD+ K+PG R           L  ALLADGV  E +
Sbjct: 126 LVWSVAIAYDRSKLAQAPASWADFWDVDKYPGKRGLRK--RAVYNLEFALLADGVKVEDV 183

Query: 201 F-----PLDVDRAFRKLDELRDSVQVWWRTGDQSVQAFRNDEYRVGQIWLTRAKALKAEG 255
           +     P  V+RAF KL EL+  +Q WW  G Q  Q     +  +   +  R      +G
Sbjct: 184 YRVLSTPAGVERAFAKLSELKPHIQ-WWDAGAQPAQWLAAGDVVMTSTYSGRIAVAAQQG 242

Query: 256 YKIGWSYDGAFLVGDRIALVRGAPNRENALKLIEFWLRNPAAQAKACETLSCTPPSQKAI 315
             +   + G+    D  A+++G+ + + A +LI +    P  Q +  + +   P + +A 
Sbjct: 243 SPLAVVWPGSLYGMDYWAIIKGSRHVDQAKRLIAY-ANQPDTQVRYVQQIPYGPTNTQAA 301

Query: 316 SQMSSEARATLP-SAADVENRIIVPDAQWINANMGMLVQRWNSW 358
           +++       +P S  +++  + +    W++ +   L QR+N+W
Sbjct: 302 ARLDPALANWVPTSPQNLQGALAMNVEFWVD-HGEELEQRFNAW 344