Pairwise Alignments

Query, 1085 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

Subject, 1023 a.a., DNA polymerase from Pseudomonas simiae WCS417

 Score =  916 bits (2367), Expect = 0.0
 Identities = 496/1037 (47%), Positives = 666/1037 (64%), Gaps = 16/1037 (1%)

Query: 1    MSYAELQVTTHFSFLRGASSAQELFETAKALGIQAIGVVDRNSLAGIVRALEASRATDIR 60
            MSYAEL   ++FSF RGASSA ELFE AK  G  A+ + D  +L+GIVRA +A++A ++ 
Sbjct: 1    MSYAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVELP 60

Query: 61   LVVGCRLDLTDGMSLLVYPTDRAAYSRLTRLITLGKSRGGKNNCILHWDDVIAYSRGMIG 120
            L++G  + + +G  L++   D + Y  L RLITL + R  K +  L  +D      G++ 
Sbjct: 61   LIIGSEVRIDNGPKLVLLVEDLSGYQHLCRLITLARRRAEKGSYRLLREDFDQPLPGLLA 120

Query: 121  VLVPDLPDATCAAQLRRIAEAFGDRAYVSLCLRRRQNDQMRLHEISNLAARFKVKTVVTN 180
            + V +  D    +Q  R    FG+R ++++ L   QND   L +   LAA   +  V   
Sbjct: 121  LWVAEDSDTQADSQWLR--RTFGERLWLAVHLHCGQNDARHLEQRLQLAASLHLPAVACG 178

Query: 181  DVLFHEPGRRQLQDIVTCIRHNTTIDDVGFERERHADRYLKPPEEMERLFSRYSEALART 240
            DV  H  GRR LQD +T IRH+  + + G     + +R+L+  + +  L+ +    L  T
Sbjct: 179  DVHMHARGRRALQDTMTAIRHHVPVAEAGTRLHPNGERHLRSLDALAALYPQ--PLLDET 236

Query: 241  LEIVRRCKFSLEELTYQYPEEAIVPGKDAQASLEHYVWECAPDRYPEGLPQDVLKTVRHE 300
              I RRC F L +L Y YP E +  G +AQ+ L     E    R+P+G+     + +  E
Sbjct: 237  ETIARRCTFDLSQLRYHYPHELVPAGHNAQSWLRAVTEEGIAKRWPQGVDAKTAQQINSE 296

Query: 301  LDLIRTMKYAPYFLTVFSIVRFARSQGILCQGRGSAANSAVCYILGITSIDPSTNDLLFE 360
            L+LI  + Y  YFLTV  IV+FARS+ ILCQGRGSAANSAVCY LGIT IDPS   +LFE
Sbjct: 297  LELISELGYESYFLTVHDIVQFARSRSILCQGRGSAANSAVCYALGITEIDPSLTSMLFE 356

Query: 361  RFVSQERDEPPDIDVDFEHERREEVIQWIYKTYTKDKAALCATVTRYRAKGAIRDVGKAL 420
            RF+S+ER+EPPDIDVDFEHERREEV+Q++++ Y + +AAL A V+ Y A GA+RDV KAL
Sbjct: 357  RFLSRERNEPPDIDVDFEHERREEVLQYVFQRYGRTRAALTAVVSSYHASGAVRDVAKAL 416

Query: 421  GLPEDVIKALSSGMWSWSEEVPDRN-IRELNLNPDDRRLALTLKLAQQLMGAPRHLGQHP 479
            GLP D I AL+     WS+  P  + +RE   +PD   L   L L QQL+G PRHL QHP
Sbjct: 417  GLPPDQINALADCCGRWSDAAPPLDRLREGGFDPDSPILRRVLTLTQQLIGFPRHLSQHP 476

Query: 480  GGFVLTHDRLDDLVPIEPATMKDRQIIEWDKDDVEALKFMKVDVLALGMLTCMAKAFDLI 539
            GGFV++   LD LVP+E A M +R II+WDKDD++A+  +KVD+LALGML+ + + FDL+
Sbjct: 477  GGFVISEYPLDTLVPVENAAMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDLL 536

Query: 540  REHKGQQLDLSNIEQEDAATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVA 599
            R H+ + L L+ I +ED ATYAMI KADT+G FQIESRAQM+MLPRLKP+ FYDLV++VA
Sbjct: 537  RRHRNRDLALATIPKEDPATYAMISKADTIGVFQIESRAQMSMLPRLKPQKFYDLVIEVA 596

Query: 600  IVRPGPIQGDMVHPYLRRREGKEPVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFT 659
            IVRPGPIQG MVHPYLRRR  +E   YP+PEL+ VL +TLG+PLFQE  M++AMV A + 
Sbjct: 597  IVRPGPIQGGMVHPYLRRRNKEEETTYPSPELKVVLERTLGIPLFQEQVMQIAMVAADYG 656

Query: 660  GGEADQLRKSMATFKFTGGVSRFKDKLVSGMVKNGYSPEFAEKTFSQLEGFGSYGFPESH 719
             GEADQLR+SMA +K  GG+   +++L +GM+KNGYS  FA + F Q++GFGSYGFPESH
Sbjct: 657  PGEADQLRRSMAAWKRHGGLEPHQERLRTGMLKNGYSEAFAAQIFEQIKGFGSYGFPESH 716

Query: 720  AASFALIAYASNYIKCHYPDVFCAALLNSQPMGFYAPAQIVGDAIKHGVEVRPVCVNRSR 779
            AASFAL+ YAS ++KCH P  F  AL+NS PMGFY+P QI+ DA +H +++RPV V  S 
Sbjct: 717  AASFALLTYASCWLKCHEPAAFACALINSWPMGFYSPDQILQDARRHRLQIRPVDVQASD 776

Query: 780  WDCTLERIEGSDRHAVRLGFRQVKGLAVADAARIVAARMNNPFASVDDMWRRSSVPTEAL 839
            WDC+LE I+G+ + A+R+G R + G    DA RI AAR    F+ + D+  R+ +   A 
Sbjct: 777  WDCSLEPIDGA-QPAIRMGLRMISGFREEDARRIEAARHRRAFSDIADLDDRAGLDARAQ 835

Query: 840  VQLAEADAFLPSLKLERRDALWAIKALRDEPLPLFAAAAEREATAIAEQQEPEVALRQMT 899
              LA+A A L +L   R  A W +  +  + L LFA         +    E  V L   T
Sbjct: 836  ALLADAGA-LRALAGNRHKARWEVAGVHKQ-LGLFA--------GLPSPDEAVVELPSPT 885

Query: 900  DGHNVIEDYSHTGLTLRQHPVAFLRRDLSARNIIPCAEAMNARDGRWVYTAGLVLVRQKP 959
             G ++  DY+  G TL  HP+A LR +L  R      E M    GR V  AGLV  RQ+P
Sbjct: 886  VGEDLHADYATVGTTLGPHPLALLRAELRKRRCRSSQELMAVEHGRNVSVAGLVTGRQRP 945

Query: 960  GSAKGVMFITIEDETGPANIVVWPSLFEKRRSVVLGSSMMAINGRIQREGEVVHLVAQQL 1019
            G+A GV F+T+EDE G  N+VVW  L E++R  ++GS +M ++GR +  GEV HL+A +L
Sbjct: 946  GTASGVTFVTLEDEFGNLNVVVWRDLAERQRQALVGSRLMKVDGRWEAVGEVRHLIAGRL 1005

Query: 1020 FDLSADLVGLADRDTGF 1036
             DL+  L G+  R   F
Sbjct: 1006 TDLTPLLEGITVRSRDF 1022