Pairwise Alignments

Query, 1085 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

Subject, 1033 a.a., error-prone DNA polymerase from Pseudomonas putida KT2440

 Score =  912 bits (2357), Expect = 0.0
 Identities = 489/1036 (47%), Positives = 673/1036 (64%), Gaps = 18/1036 (1%)

Query: 3    YAELQVTTHFSFLRGASSAQELFETAKALGIQAIGVVDRNSLAGIVRALEASRATDIRLV 62
            YAEL   ++FSF RGASSA ELF  A+  G QA+ + D  +LAGIVRA +A++   +RL+
Sbjct: 13   YAELHCLSNFSFQRGASSADELFRRAREQGYQALAITDECTLAGIVRAWQAAKVHQLRLI 72

Query: 63   VGCRLDLTDGMSLLVYPTDRAAYSRLTRLITLGKSRGGKNNCILHWDDVIAYSRGMIGVL 122
            VG  + L DG  L++   +   Y  L  LIT  + R  K    L  DD++ + +G++ + 
Sbjct: 73   VGSEVQLCDGPKLVLLVENLTGYQNLCALITRARRRAEKGAYQLFRDDLLLHHQGLLALW 132

Query: 123  VP-DLPDATCAAQLRRIAEAFGDRAYVSLCLRRRQNDQMRLHEISNLAARFKVKTVVTND 181
            V  D  D    A LR +   F +R ++++ L R  +D +RL  +  LAA   ++ V   D
Sbjct: 133  VAADSGDTATGAWLRSV---FAERLWLAVHLHRGSDDAVRLQRLRALAADVGIRAVACGD 189

Query: 182  VLFHEPGRRQLQDIVTCIRHNTTIDDVGFERERHADRYLKPPEEMERLFSRYSEALARTL 241
            V  H  GRR LQD +T IR +  + + G     + +R+L+   ++  L+    + LA TL
Sbjct: 190  VHMHVRGRRALQDCMTAIRQHCQVSEAGRFLFANGERHLRSQAQLAELYPL--DLLAETL 247

Query: 242  EIVRRCKFSLEELTYQYPEEAIVPGKDAQASLEHYVWECAPDRYPEGLPQDVLKTVRHEL 301
             I RRC+F L EL YQYP E +  G    + L     +  P R+P+G    V   +  EL
Sbjct: 248  VIARRCQFDLSELNYQYPRELVPEGHTPASWLRELCEQGMPLRWPDGPSGKVRDVLAKEL 307

Query: 302  DLIRTMKYAPYFLTVFSIVRFARSQGILCQGRGSAANSAVCYILGITSIDPSTNDLLFER 361
             LI  + Y  YFLTV  IV FARSQ ILCQGRGSAANS VC++LGIT +DP  + LLFER
Sbjct: 308  GLIEELGYESYFLTVHDIVAFARSQRILCQGRGSAANSVVCFVLGITELDPMKHHLLFER 367

Query: 362  FVSQERDEPPDIDVDFEHERREEVIQWIYKTYTKDKAALCATVTRYRAKGAIRDVGKALG 421
            F+S+ER+EPPDIDVDFEH+RREEVIQ++++ Y + +AAL A V  Y A GA+RDV +ALG
Sbjct: 368  FLSRERNEPPDIDVDFEHDRREEVIQYVFRRYGRHRAALTAVVNTYHAAGAVRDVARALG 427

Query: 422  LPEDVIKALSSGMWSWSEEVPD-RNIRELNLNPDDRRLALTLKLAQQLMGAPRHLGQHPG 480
            LP D + AL+     WS+ +PD + + E         L   L LA +L+G PRHL QHPG
Sbjct: 428  LPADQVDALAKCCGRWSDRIPDDQRLAEAGFEAGSPSLRRVLVLAGELIGFPRHLSQHPG 487

Query: 481  GFVLTHDRLDDLVPIEPATMKDRQIIEWDKDDVEALKFMKVDVLALGMLTCMAKAFDLIR 540
            GFV++   LD LVP+E A M +R +I+WDKDD++ +  +KVDVLALGML+ + + FD ++
Sbjct: 488  GFVISQQPLDQLVPVENAAMPERTVIQWDKDDLDMVGLLKVDVLALGMLSALRRCFDQLQ 547

Query: 541  EHKGQQLDLSNIEQEDAATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAI 600
             H+G+ L L+ I  ED ATYAMI +A+T+G FQIESRAQMAMLPRL+P+ FYDLV++VAI
Sbjct: 548  HHRGRHLTLATIPSEDPATYAMISRAETMGVFQIESRAQMAMLPRLRPQKFYDLVIEVAI 607

Query: 601  VRPGPIQGDMVHPYLRRREGKEPVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTG 660
            VRPGPIQGDMVHPYLRRR  +EPV YP+P+L+ V  +TLGVPLFQE  M +AMV A +T 
Sbjct: 608  VRPGPIQGDMVHPYLRRRLKQEPVTYPSPQLKEVFERTLGVPLFQEQVMELAMVAADYTP 667

Query: 661  GEADQLRKSMATFKFTGGVSRFKDKLVSGMVKNGYSPEFAEKTFSQLEGFGSYGFPESHA 720
            GEADQLR+SMA +K  GG+   +++LV GM++NGY+  FAE+ F Q++GFGSYGFPESHA
Sbjct: 668  GEADQLRRSMAAWKRHGGLEPHRERLVQGMLRNGYTLAFAERIFEQIKGFGSYGFPESHA 727

Query: 721  ASFALIAYASNYIKCHYPDVFCAALLNSQPMGFYAPAQIVGDAIKHGVEVRPVCVNRSRW 780
            ASFAL+ YAS+++KCH P +F  AL+NS PMGFY+P Q++ +A + G+EVRPV V  S W
Sbjct: 728  ASFALLCYASSWLKCHEPAIFTCALVNSWPMGFYSPDQLLQEARRQGIEVRPVDVCHSDW 787

Query: 781  DCTLERIEGSDRHAVRLGFRQVKGLAVADAARIVAARMNNPFASVDDMWRRSSVPTEALV 840
            DCTLE  +     A+R+G R V+GLA ADA R+  AR   P+ +V+D+  R+ +   A  
Sbjct: 788  DCTLEP-DAEGTLAIRMGLRLVRGLAEADAKRVQQARSQRPWRNVEDLCLRAGLDARARA 846

Query: 841  QLAEADAFLPSLKLERRDALWAIKALRDEPLPLFAAAAEREATAIAEQQEPEVALRQMTD 900
            +LA+  A L +L  +R  A W + A++ + LPLFA     +  A+ E+    V L   T 
Sbjct: 847  RLADGGA-LRALASDRHQARWQVAAVQPQ-LPLFA-----DVQALPEE---PVQLPVPTV 896

Query: 901  GHNVIEDYSHTGLTLRQHPVAFLRRDLSARNIIPCAEAMNARDGRWVYTAGLVLVRQKPG 960
            G +++ DY   G TL  HP+A LR  L A      +E      G  +  AGLV+ RQ+P 
Sbjct: 897  GEDLMADYQTLGTTLGPHPLALLRARLRALGCRSSSELQGVEHGDNIAVAGLVVGRQRPQ 956

Query: 961  SAKGVMFITIEDETGPANIVVWPSLFEKRRSVVLGSSMMAINGRIQREGEVVHLVAQQLF 1020
            +A GV F+T+EDE G  N+VVW +L E++R  ++GS ++ ++GR+++E  V HL+A++L 
Sbjct: 957  TASGVTFVTLEDEHGMVNVVVWRALAERQRRALVGSQLLKVSGRLEQENGVRHLIARRLE 1016

Query: 1021 DLSADLVGLADRDTGF 1036
            D+S  L GL  R   F
Sbjct: 1017 DVSPLLQGLDVRSRDF 1032