Pairwise Alignments

Query, 350 a.a., ATP-dependent DNA ligase from Agrobacterium fabrum C58

Subject, 833 a.a., DNA ligase D from Pseudomonas putida KT2440

 Score =  201 bits (511), Expect = 6e-56
 Identities = 115/323 (35%), Positives = 170/323 (52%), Gaps = 13/323 (4%)

Query: 22  PRRKRNPAQPQLLFNPMPDRVEPALEQLKAHPPQGDQWSWELKWDGYRLAVHIEPTGVRI 81
           PR  R  A  ++   P+P +++P L  L   PP GD W +E+K+DGYR+   IE   +R+
Sbjct: 198 PRSSRKRAD-KVQAAPLPAQLQPQLATLVDSPPSGD-WRYEVKFDGYRILARIEGQDIRL 255

Query: 82  LTRGGHDWTHRFPAIAEAARALGPATMIIDGEAVVLDDEGRPDFGLLQKSLGASGKAAGN 141
            TR GHDW+ + P    A RALG  +  +DGE VV D+ G  DF  LQ +          
Sbjct: 256 FTRNGHDWSSKMPRQVAALRALGIDSAWLDGEMVVADENGMADFQALQNAFDT------E 309

Query: 142 RASDAILYAFDLMYLDGHDLREMEYRSRRHLLEDTIKAND-GAIRLSETLDADPNVLLEH 200
                  Y FDL +L G DLR++  ++RR+ L   ++ N    I+ S   D     LL+ 
Sbjct: 310 HDERITYYLFDLPFLGGQDLRQLPLQNRRNTLRQLLEHNHCDVIKYSADFDEPVQSLLDS 369

Query: 201 IRSLGLEGIVGKHLDQPYRSGRAGDWVKVKCIESEAFMVVGYEPSMASPAGFASLVVAAY 260
              L LEG++GK +D  Y   R+ DW+K+KC + + F++VGY     S +GF +L++A +
Sbjct: 370 ACRLKLEGLIGKRVDSVYSGRRSPDWIKLKCKQRQEFVIVGYTDPKGSRSGFGALLLALH 429

Query: 261 RGD--ELIHVGNVGTGFKEAEMIGLRKMLDKLRWKRK--PPPVPFTEKTDIVWVEPTLIA 316
             D  +L + G VGTGF    +  +   L  L   R   P P    E   + W+ P L+A
Sbjct: 430 DNDSGQLRYAGKVGTGFNATTLASIHARLKPLEIARPALPSPPAGAEARGVHWLRPQLLA 489

Query: 317 EIEFRAWTADGKLRHASYKGLRE 339
           E+ F   T DG +RH+ + GLR+
Sbjct: 490 EVAFAQMTRDGIVRHSVFHGLRD 512