Pairwise Alignments

Query, 480 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 481 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score =  128 bits (322), Expect = 4e-34
 Identities = 130/460 (28%), Positives = 196/460 (42%), Gaps = 24/460 (5%)

Query: 12  TGIAGLDEILRGGLPASNLYILQGAPGSGKTTAALQFLRAGVAAGESCIYVTLSQTAAEL 71
           TGI GLD +L+GGL A   YI+QG PG+GKT  A Q     V  G   +  TL   + E 
Sbjct: 10  TGIDGLDALLKGGLIAGASYIIQGPPGAGKTILANQLACGHVRGGGRVLVATLLSESHER 69

Query: 72  KAIAVSHGWTLDGIRIEELATSGSVNEADDQSIFMTSDLRLDETRKAIEAAIEEHKPRRL 131
               +S     D   + +     S  +  +Q         LD   + +   I   +   L
Sbjct: 70  LFQYLSTLDFFDPALVGDKIQFVSAFDTLEQD-------GLDAVVRLLRQEIARQQASLL 122

Query: 132 VYDSLLEIRL---ITGDSPRFRRELIAFKAFLAKQDVVALLLDTQSSDFDRSGEEMEGLA 188
           + D +L  R+      D+ +F  EL    AF        LLL +   D    G     + 
Sbjct: 123 IVDGVLNARVRAETALDTKKFVSELQGHAAFAG---CTVLLLTSARLD---EGSPEHTMV 176

Query: 189 HGVIRFDKSLEEYGGVRRRVEISKMRSVPIADGYHDMAIREGEGVVIFPRI--MPSAASD 246
            GVI   + L     V R V++ K R      G H+  I E  G+ ++PR+  + S  S 
Sbjct: 177 DGVIELGEQLVGSRAV-RHVQLRKTRGSGALSGRHECLIDE-SGMQVYPRLEALFSHPSQ 234

Query: 247 TGKPQL--IKSGVAELDEMFGGGQEAGTTTLVIGQAGTGKSTMSSLYATAALERGENVAL 304
            G   L  I SGV   DEM GGG   G+ +L++G +G GK+++   +  A+  +   +  
Sbjct: 235 LGSGTLARISSGVPTFDEMLGGGLATGSVSLLMGPSGIGKTSLGLAFLGASTPQAPGLH- 293

Query: 305 FLFEERLETFFRRSEGLGMQLRQFHKDGRLILRDFNPNEISPGEFGQIVRDAVTQNKSKV 364
           F F E  E    ++  LG       K G L L      E    + G  + + V    SK 
Sbjct: 294 FGFYETPERLRSKAASLGYDFAAMEKGGSLQLCWQPTTEGLLDQVGARLLERVAAQGSKR 353

Query: 365 VVIDSLTGYLNSLPHRDKAVRDIQSLLKYLARSGVLTMLIVAQHGLLGQNVGIDV-DVSF 423
           VVIDSL  +        +     ++L   L    V  ML      + G  +     D+S 
Sbjct: 354 VVIDSLGAFSRLAIDPTRLNAFFRALAGELRARDVSVMLTWEMRDIFGAEISAPAPDLSS 413

Query: 424 LGDTVLLLRIMEHEGRLRRNITVVKKRHGPHDLDVRELII 463
           + D ++L+R +E + +LRR ++V+K R   HD  + EL+I
Sbjct: 414 IVDNLMLMRFVELDSQLRRMLSVLKVRDSHHDPALHELLI 453



 Score = 47.4 bits (111), Expect = 1e-09
 Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 20/223 (8%)

Query: 11  TTGIAGLDEILRGGLPASNLYILQGAPGSGKTTAALQFLRAGVAAGESCIYVTLSQTAAE 70
           ++G+   DE+L GGL   ++ +L G  G GKT+  L FL A        ++    +T   
Sbjct: 244 SSGVPTFDEMLGGGLATGSVSLLMGPSGIGKTSLGLAFLGASTPQAPG-LHFGFYETPER 302

Query: 71  LKAIAVSHGWTLDGIRIEELATSGSVNEADDQSIFMTSDLRLDETRKAIEAAIEEHKPRR 130
           L++ A S G+         +   GS+          T++  LD+    +   +     +R
Sbjct: 303 LRSKAASLGYD-----FAAMEKGGSLQLCWQP----TTEGLLDQVGARLLERVAAQGSKR 353

Query: 131 LVYDSLLEIRLITGDSPRFRRELIAFKAFLAKQDVVALLL----DTQSSDFDRSGEEMEG 186
           +V DSL     +  D  R      A    L  +DV  +L     D   ++      ++  
Sbjct: 354 VVIDSLGAFSRLAIDPTRLNAFFRALAGELRARDVSVMLTWEMRDIFGAEISAPAPDLSS 413

Query: 187 LAHGVIRFDKSLEEYGGVRRRVEISKMRSVPIADGYHDMAIRE 229
           +   ++   + +E    +RR + + K+R     D +HD A+ E
Sbjct: 414 IVDNLMLM-RFVELDSQLRRMLSVLKVR-----DSHHDPALHE 450