Pairwise Alignments

Query, 315 a.a., ABC transporter membrane spanning protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 290 a.a., putative Opine ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  184 bits (467), Expect = 2e-51
 Identities = 99/260 (38%), Positives = 163/260 (62%), Gaps = 5/260 (1%)

Query: 45  LILVIILAIIGPTLLNELATKQNLRGRNLAPFDFSREWFMWLGADALGRPLWPRIIVATQ 104
           L++++++A+  P +      +QN+  R   P   S E+  WLG D  GR +  R+I  T+
Sbjct: 32  LVMIVLVALFAPLIAPYDPLQQNIAYRLEPP---SAEF--WLGTDTYGRDVLSRLIYGTR 86

Query: 105 NTIMVAAGAVFISAVVGTLLGLIAGFSSQRTSQIIMRLADVIMSFPSLLVAVIVLYILGS 164
            +++V   AV I+ VVG+ LG+IAG+    T ++I    DV++SFP+LL+ ++V  +LG+
Sbjct: 87  VSLLVGFVAVMIAMVVGSALGVIAGYVGGITDRLITGFVDVLLSFPTLLLGLMVAAMLGA 146

Query: 165 SILNLMLVLSITRIPVYLRTTRAEVMEIRSRMFVQAARVMGASSKRILFRHILPVVLPTL 224
           S+ NL++ ++IT I  ++R  RA  + ++ R FV+A R +G    R++  HILP ++  +
Sbjct: 147 SLENLIIAIAITEIAPFVRIARAPTIALKQRDFVEAGRSLGYGPGRLMTVHILPNMISEV 206

Query: 225 TTLATLDFAYVMLAESALSFLGIGIQPPEITWGLMISQGRQYLTNAWWLSFWPGLAIILT 284
             L  L  A  +  E++LSF+G+G+ PP  TWG MI +G + + +AWWL+ +P LAI+LT
Sbjct: 207 LVLGALWMATAIRTEASLSFIGLGVPPPAPTWGSMIREGFENILDAWWLTVFPSLAILLT 266

Query: 285 TLSLNLLSNWLRIALDPVQR 304
            L+L+LL + LR A DP  R
Sbjct: 267 VLALSLLGDALRDANDPKTR 286