Pairwise Alignments

Query, 539 a.a., ABC transporter nucleotide binding/ATPase (oligopeptide) from Agrobacterium fabrum C58

Subject, 623 a.a., ATPase components of various ABC-type transport systems, contain duplicated ATPase from Enterobacter asburiae PDN3

 Score =  473 bits (1216), Expect = e-137
 Identities = 264/562 (46%), Positives = 366/562 (65%), Gaps = 43/562 (7%)

Query: 5   LLEVRNLSVDFYTATGTVKAVRNISYHVDRGETLAILGESGSGKSVSSSAIMNLIDMPPG 64
           +L V  L++ F      + AV+N+S+ + RGETLAI+GESGSGKSV++ A+M L++   G
Sbjct: 12  VLAVHQLNIAFQEERQFIPAVQNLSFTLRRGETLAIVGESGSGKSVTALALMRLLEQTGG 71

Query: 65  KISSGEILLNGK-----DLLKMSADDRRAVNGRLIAMIFQDPLSHLNPVYTVGWQMREAL 119
           +ISS ++LL  +     DL ++S    + V G  IAMIFQ+P++ LNPV+ VG Q+ E++
Sbjct: 72  QISSEKMLLRRRNRQVIDLNELSGSQMQGVRGADIAMIFQEPMTSLNPVFPVGEQIAESI 131

Query: 120 RTH-GIDNRQAQVEALRLFKRVALPEPEKAVDKYPHEFSGGQRQRVMIAMALALKPNLLI 178
           R H G+   +A  EA R+ + V +PE +  + +YPH+ SGG RQRVMIAMAL+ +P +LI
Sbjct: 132 RLHQGLSGDEALNEARRMLELVRIPEAQAILGRYPHQLSGGMRQRVMIAMALSCRPAVLI 191

Query: 179 ADEPTTALDVTVQAEVLALLKELQRETGMGVLIITHDLGVVSEVADRVVVMEKGVLVESG 238
           ADEPTTALDVT+QA++L L+K LQ+E  MGV+ ITHD+GVV+++ADRV+VM KG  VE+G
Sbjct: 192 ADEPTTALDVTIQAQILQLIKVLQQEMEMGVIFITHDMGVVADIADRVLVMHKGSAVETG 251

Query: 239 TVREVYRNPQHPYTKKLIAAAPGKGQLH-------------------------EPSTDGE 273
            V +++  P HPYTK L+AA P  G ++                         +    G+
Sbjct: 252 PVEQIFHAPVHPYTKALLAAVPRLGAMNGSDLPRRFPLISLEASEQQEDEREQDTVVPGK 311

Query: 274 PILKVRN-----------ARKSYGGFEALKGISFDLKAGETVAVVGESGSGKSTLARILL 322
           PIL+VR+             +      A++ +SFDL  GET+A+VGESG GKST  R LL
Sbjct: 312 PILEVRDLVTRFPLRSGVLNRVKREVHAVENVSFDLWPGETLALVGESGCGKSTTGRALL 371

Query: 323 RLDDPDSGTAHWKGQDLFTLSPSELFKLRRDLQMVFQDPTQSLNPRMTVYQLISEAWVIH 382
           RL +   G+  + G+ + TL  S L  +RRD+Q +FQDP  SL+PR TV   I E   +H
Sbjct: 372 RLVESQEGSITFNGERIDTLPDSRLQAVRRDIQFIFQDPYASLDPRHTVGYSIMEPLRVH 431

Query: 383 PEILPKAKWRARAAELLERVGLSPEHMGRYPHQFSGGQRQRIAIARALALEPQLIVCDEA 442
             +L     + R A LLERVGL PEH  RYPH+FSGGQRQRI IARALAL P++++ DE+
Sbjct: 432 -NLLDGEAAQRRVAWLLERVGLKPEHAWRYPHEFSGGQRQRICIARALALNPKVVIADES 490

Query: 443 VSALDVSVQAQVVRLLDKLRREMGIAFIFIAHDLPLVRDFADYVMVMQKGEVVEFGTVAQ 502
           VSALDVS++AQ++ LL  L+R+MGIAF+FI+HD+ +V   +  V VM  G++VE G    
Sbjct: 491 VSALDVSIRAQIINLLLDLQRDMGIAFLFISHDMAVVERISHRVAVMFMGQIVEIGPRRA 550

Query: 503 VFDNPQQRYTQALISATLDPDP 524
           VF+NPQ  YT+ LI+A    DP
Sbjct: 551 VFENPQHPYTRKLIAAVPVADP 572



 Score =  206 bits (524), Expect = 2e-57
 Identities = 122/270 (45%), Positives = 169/270 (62%), Gaps = 16/270 (5%)

Query: 5   LLEVRNLSVDFYTATGT-------VKAVRNISYHVDRGETLAILGESGSGKSVSSSAIMN 57
           +LEVR+L   F   +G        V AV N+S+ +  GETLA++GESG GKS +  A++ 
Sbjct: 313 ILEVRDLVTRFPLRSGVLNRVKREVHAVENVSFDLWPGETLALVGESGCGKSTTGRALLR 372

Query: 58  LIDMPPGKISSGEILLNGKDLLKMSADDRRAVNGRLIAMIFQDPLSHLNPVYTVGWQMRE 117
           L++   G I+      NG+ +  +     +AV  R I  IFQDP + L+P +TVG+ + E
Sbjct: 373 LVESQEGSIT-----FNGERIDTLPDSRLQAVR-RDIQFIFQDPYASLDPRHTVGYSIME 426

Query: 118 ALRTHGI-DNRQAQVEALRLFKRVALPEPEKAVDKYPHEFSGGQRQRVMIAMALALKPNL 176
            LR H + D   AQ     L +RV L +PE A  +YPHEFSGGQRQR+ IA ALAL P +
Sbjct: 427 PLRVHNLLDGEAAQRRVAWLLERVGL-KPEHAW-RYPHEFSGGQRQRICIARALALNPKV 484

Query: 177 LIADEPTTALDVTVQAEVLALLKELQRETGMGVLIITHDLGVVSEVADRVVVMEKGVLVE 236
           +IADE  +ALDV+++A+++ LL +LQR+ G+  L I+HD+ VV  ++ RV VM  G +VE
Sbjct: 485 VIADESVSALDVSIRAQIINLLLDLQRDMGIAFLFISHDMAVVERISHRVAVMFMGQIVE 544

Query: 237 SGTVREVYRNPQHPYTKKLIAAAPGKGQLH 266
            G  R V+ NPQHPYT+KLIAA P     H
Sbjct: 545 IGPRRAVFENPQHPYTRKLIAAVPVADPAH 574