Pairwise Alignments

Query, 884 a.a., ATP-dependent DNA ligase from Agrobacterium fabrum C58

Subject, 819 a.a., ATP-dependent DNA ligase from Pseudomonas simiae WCS417

 Score =  561 bits (1446), Expect = e-164
 Identities = 350/879 (39%), Positives = 469/879 (53%), Gaps = 90/879 (10%)

Query: 3   SDKLSTYKQKRDFQKTQEPSGAA---KLKASNRRRFVIQKHDATRLHYDLRLELDGVFKS 59
           S  LS Y +KRDF  T EP+G+A   K KAS    FVIQKHDA  LHYD RLELDGV  S
Sbjct: 2   SKPLSEYNRKRDFGITAEPAGSAPAGKRKAS-ALSFVIQKHDARNLHYDFRLELDGVLLS 60

Query: 60  WAVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGNKTP 119
           WAV KGPSLDP  KRLAV VEDHPL YG FEG+IP GQYG G V++WDRG W+P     P
Sbjct: 61  WAVPKGPSLDPSHKRLAVHVEDHPLSYGGFEGSIPAGQYGAGDVIVWDRGIWQPHDE--P 118

Query: 120 EQALAKGDFKFTLEGERLHGSFVLVRMRNDRDGGKRTNWLLIKHRDDFSVEEKGAAVLDE 179
            +A A G  KFTL GE+L G + LVR R    G K   WLLIK +D  +       ++  
Sbjct: 119 RKAYAAGKLKFTLVGEKLSGDWALVRTRLKGSGDKE-QWLLIKEKDPQARSADDYDIVQA 177

Query: 180 NDTSVASGRTMEAIAAGKGRKPKPFMVQSGDVQADAVWDSNHGLAAEERASDTKAKRKPA 239
              SV S  ++         KPK                             T+AK +  
Sbjct: 178 QPNSVLSDASVG--------KPK-----------------------------TRAKAR-- 198

Query: 240 LKKPAKSTMPEFIPPQLCETLDRPPSAKGWIHEIKFDGYRIQTRIENGEVTLKTRKGLDW 299
                K+ +PE   PQL   +DR P    W +EIKFDGYR+  RI+ GEV L TR G DW
Sbjct: 199 -----KTALPEQFTPQLATLVDRAPEGD-WQYEIKFDGYRMLARIQAGEVRLFTRNGHDW 252

Query: 300 TAKYP--AIATSAANLPDAIIDGEICALDENGAPDFAALQAALSEGKTDELVYFAFDLLF 357
           T   P    A  A  L D+ +DGE+ +L+ +G PDF ALQ A   G++ ++VY+ FD  F
Sbjct: 253 TECLPRQVKALQALKLKDSWLDGEVVSLNGDGLPDFQALQNAFDIGRSLDIVYYLFDAPF 312

Query: 358 EENEDLRQLPLTERKERLQTLLDDAGEDPRLRFVEHFETGGDAVLKSACKLSLEGIVSKQ 417
              ED RQ P+ ER+  L+  L  +     LR+ E F      + +SAC L+LEG++ K+
Sbjct: 313 LNGEDRRQAPVEERRAALKEALAGS-RSTLLRYSEAFTAHHRDIFESACDLALEGVIGKR 371

Query: 418 ADAPYQSGRTETWAKSKCRAGHEVVIGAYAKTNGK---FRSLLVGVFKGDHFVYVGRVGT 474
             +PY S R+  W K KCR   E VI  Y +  G    F +LL+ V      VY GRVGT
Sbjct: 372 LGSPYVSRRSADWIKLKCRLSQEFVIVGYTRPQGSRSGFGALLLAVNNDTGLVYAGRVGT 431

Query: 475 GYGAKTVDTILPRLRELETSKSPFTGIGAPKKDPNVVWVKPELVAEIQFAGWTADGLVRQ 534
           G+    +  I  +L  LE   SP     +  +   V WVKP LVA++QFA WT + +VRQ
Sbjct: 432 GFDQAALKAIYAQLTPLECETSPLAKPLSSAQARGVHWVKPTLVAQVQFAEWTREDVVRQ 491

Query: 535 AAFKGLREDKPAHEVEAEKPASPAKTDTPTPAKSKPSRPARGKNAKAEVMGVMISSPDKA 594
           AAF GLR DKP  +V  E+P         T    KP         K     V I+ PD+ 
Sbjct: 492 AAFVGLRTDKPVAQVVHEQPR--------TVHSKKP--------VKKTSRDVNITHPDRV 535

Query: 595 LWPDANDGEPVTKEDLARYHEAVGPWLIDHIKGRPCSIIRTPDGIGGEVFFQRH----AM 650
           +  D + G    K+ LA++++ +  W++  ++ RP S++R P+GI GE FFQ+H    A+
Sbjct: 536 I--DKHSG--TQKQQLAQFYDTISQWILPFLRHRPVSLLRAPEGIEGEQFFQKHSERLAI 591

Query: 651 PGTSNLIELVKVFGDKKPYLQIDRVEGLAAIAQIGGVELHPWNCEPGQPEVPGRLVFDLD 710
           P    L +   +       ++ID V  L    Q+G VE H W     + E P   V DLD
Sbjct: 592 PNIKQLDQ--SLDPGHARLMEIDNVGALIGAVQMGSVEFHTWGATSDKIETPDLFVLDLD 649

Query: 711 PGPDVPFSTVVEAAREMRDRLEELGLVSFCKTTGGKGLHVVTPLAVPKGKKLSWPEAKGF 770
           P P +P+  ++EAA+     L+ELGL +F KT+GGKGLH++ PLA    ++ +W   K F
Sbjct: 650 PDPALPWKAMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLIVPLA----RRDNWETVKAF 705

Query: 771 AHDVCMQMARETPELYLIKMAKNQRNGRIFLDYLRNDRMATAVAPLSPRARAGAPVSMPL 830
           A  +   M  + PE +        R G+IF+DYLRN R A+ VA  S RAR G PVS+P+
Sbjct: 706 AKGIAQFMTEQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPV 765

Query: 831 SWKQVKTDLDPKRFTIRTVPALLS--KTTAWQDYCDGQR 867
           S ++++     +++T+  V   L+  K   W  Y + Q+
Sbjct: 766 SREELEGLRGAQQWTVANVLQRLNALKADPWAGYANRQK 804