Pairwise Alignments

Query, 884 a.a., ATP-dependent DNA ligase from Agrobacterium fabrum C58

Subject, 833 a.a., DNA ligase D from Pseudomonas putida KT2440

 Score =  550 bits (1418), Expect = e-160
 Identities = 331/840 (39%), Positives = 465/840 (55%), Gaps = 70/840 (8%)

Query: 6   LSTYKQKRDFQKTQEPSGAAKL-KASNRRRFVIQKHDATRLHYDLRLELDGVFKSWAVTK 64
           L  Y +KRDF  T EPSG  K  K ++  +F IQKHDA+ LHYD RLELDG  KSWA+ K
Sbjct: 5   LQEYARKRDFNATPEPSGKRKRGKRAHALQFCIQKHDASHLHYDFRLELDGTLKSWAIPK 64

Query: 65  GPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGNKTPEQALA 124
           GPSLDP  +RLAV VEDHPLDY DFEG IP+G YG G V++WDRG WEPEG+    +A A
Sbjct: 65  GPSLDPKVRRLAVHVEDHPLDYADFEGHIPEGHYGAGDVIVWDRGIWEPEGD--AHEAYA 122

Query: 125 KGDFKFTLEGERLHGSFVLVRMRNDRDGGKRTNWLLIKHRDDFSVEEKGAAVLDENDTSV 184
           KG  +F L GE+L G + L R       GK+  W+L+K  D  +  E   ++++    SV
Sbjct: 123 KGKLRFRLLGEKLGGVWNLFRTHL---AGKKEQWMLVKSHDAQACSETEYSIVEALPDSV 179

Query: 185 ASGRTMEAIAAGKGRKPKPFMVQSGDVQADAVWDSNHGLAAEERASDTKAKRKPALKKPA 244
            S RT+                                 +A ++A+  ++ RK A K  A
Sbjct: 180 LSERTLVPCK-----------------------------SAAKKATAPRSSRKRADKVQA 210

Query: 245 KSTMPEFIPPQLCETLDRPPSAKGWIHEIKFDGYRIQTRIENGEVTLKTRKGLDWTAKYP 304
            + +P  + PQL   +D PPS   W +E+KFDGYRI  RIE  ++ L TR G DW++K P
Sbjct: 211 -APLPAQLQPQLATLVDSPPSG-DWRYEVKFDGYRILARIEGQDIRLFTRNGHDWSSKMP 268

Query: 305 --AIATSAANLPDAIIDGEICALDENGAPDFAALQAALSEGKTDELVYFAFDLLFEENED 362
               A  A  +  A +DGE+   DENG  DF ALQ A      + + Y+ FDL F   +D
Sbjct: 269 RQVAALRALGIDSAWLDGEMVVADENGMADFQALQNAFDTEHDERITYYLFDLPFLGGQD 328

Query: 363 LRQLPLTERKERLQTLLDDAGEDPRLRFVEHFETGGDAVLKSACKLSLEGIVSKQADAPY 422
           LRQLPL  R+  L+ LL+    D  +++   F+    ++L SAC+L LEG++ K+ D+ Y
Sbjct: 329 LRQLPLQNRRNTLRQLLEHNHCDV-IKYSADFDEPVQSLLDSACRLKLEGLIGKRVDSVY 387

Query: 423 QSGRTETWAKSKCRAGHEVVIGAYAKTNGK---FRSLLVGVFKGD--HFVYVGRVGTGYG 477
              R+  W K KC+   E VI  Y    G    F +LL+ +   D     Y G+VGTG+ 
Sbjct: 388 SGRRSPDWIKLKCKQRQEFVIVGYTDPKGSRSGFGALLLALHDNDSGQLRYAGKVGTGFN 447

Query: 478 AKTVDTILPRLRELETSKSPFTGIGAPKKDPNVVWVKPELVAEIQFAGWTADGLVRQAAF 537
           A T+ +I  RL+ LE ++       A  +   V W++P+L+AE+ FA  T DG+VR + F
Sbjct: 448 ATTLASIHARLKPLEIARPALPSPPAGAEARGVHWLRPQLLAEVAFAQMTRDGIVRHSVF 507

Query: 538 KGLREDKPAHEVEAEKPASPAKTDTPTPAKSKPSRPARGKNAKA-EVMG-VMISSPDKAL 595
            GLR+DK A  ++ E+ A PAKT +            R K AKA E +G + ++ PD+ +
Sbjct: 508 HGLRDDKAATAIDLER-AMPAKTVS-----------NRNKQAKASENLGELRLTHPDRVI 555

Query: 596 WPDANDGEPVTKEDLARYHEAVGPWLIDHIKGRPCSIIRTPDGIGGEVFFQRHA-MPGTS 654
            P       VTK ++A Y+  +  W++  +K RP +++R PDG+GGE+FFQ++A      
Sbjct: 556 DPTTG----VTKREVAEYYAGISQWILPQLKHRPVALVRAPDGLGGELFFQKNAGQLYIP 611

Query: 655 NLIELVKVFGDKKPYLQIDRVEGLAAIAQIGGVELHPWNCEPGQPEVPGRLVFDLDPGPD 714
           N++   K    +   + I+R + L    Q+  +ELH WN      + P R V DLDP P 
Sbjct: 612 NVLSYEKAEAGQAA-MVINRADTLLGAVQMNMLELHTWNATDKDFDKPDRFVLDLDPDPA 670

Query: 715 VPFSTVVEAAREMRDRLEELGLVSFCKTTGGKGLHVVTPLAVPKGKKLSWPEAKGFAHDV 774
           +P+  +VEA +     L+ELGL  F KT+GGKG+HVV PL     ++  W E K F+H +
Sbjct: 671 LPWKAMVEATQLTLTLLDELGLKVFLKTSGGKGIHVVVPLT----RRAGWDEVKDFSHAI 726

Query: 775 CMQMARETPELYLIKMAKNQRNGRIFLDYLRNDRMATAVAPLSPRARAGAPVSMPLSWKQ 834
              +A+  PE          R GRIF+DYLRN + AT     S RAR G PVS+P+ W++
Sbjct: 727 VNYLAKLFPERLSAVSGPKNRVGRIFIDYLRNGKGATTACAYSLRARDGLPVSVPI-WRE 785