Pairwise Alignments

Query, 345 a.a., ATP-dependent DNA ligase from Agrobacterium fabrum C58

Subject, 353 a.a., ATP-dependent DNA ligase from Agrobacterium fabrum C58

 Score =  413 bits (1061), Expect = e-120
 Identities = 211/348 (60%), Positives = 258/348 (74%), Gaps = 8/348 (2%)

Query: 4   RAKPLLQDDSLSTKSQPLRKRDPAQPNLPFDPMPDRVEPCLAMLKPVPPTGPDWAYEIKW 63
           R+KPLL+D     +S+P RKR+PAQP L FDP+PDRVEP LA+LK  PPTG +W++E+KW
Sbjct: 6   RSKPLLRDTEPPIRSKPRRKRNPAQPQLLFDPIPDRVEPALALLKAKPPTGNEWSWELKW 65

Query: 64  DGYRLAVHIEPKGVRIITRGGHDWTHRFPTIAAAAKRLGIGTAILDGEAVVLNSEGRSDF 123
           DGYRLAVHIEP+ +RI+TRGGHDWTHRFP I  AA+ LG  T I+DGEAVVL+ EGR DF
Sbjct: 66  DGYRLAVHIEPQRIRILTRGGHDWTHRFPAIEQAARALGPATMIIDGEAVVLDDEGRPDF 125

Query: 124 GALQRSLG--GRGGKRASSESILFAFDLLYFDGHDLTKTELSVRRHLLTDLLDG---AVG 178
           G LQ+SLG  G+   R +S ++L+AFDL+Y DGHDL   E   RRHLL D ++G      
Sbjct: 126 GLLQQSLGASGKQAGRRASHAVLYAFDLVYLDGHDLRGVEYRSRRHLLEDTINGPTNEAS 185

Query: 179 AIQLSEEVAGEGAELLENARSLGLEGIIAKHRDSPYRPGRTGDWLKIKCIQSESFMIVGY 238
           AI++SE +  E A LLE+   LGLEGI+ K  D PYR GRTGDW+K+KCIQSE+F IVGY
Sbjct: 186 AIRISETLDAEPAVLLEHVCRLGLEGIVGKRLDQPYRSGRTGDWVKVKCIQSEAFFIVGY 245

Query: 239 EQSAAARGGVGSLLLAARRDHDWVYVGAVGTGFKEKDAAYLKKTLDTL--KTRTPVVPLK 296
           E+SA+   G GSL LAA RD D V+VG+VGTGFK  +   L+K LDTL  K + P +P  
Sbjct: 246 ERSASYPAGFGSLALAAYRDGDLVHVGSVGTGFKGAEIIRLRKILDTLRWKRKQPPLPHS 305

Query: 297 G-KNYVFAQPTLIAEIEFRGWTDDGNLRHASYKGLREIQDNAAVFELE 343
           G  + V+ QPTLIAEIEFR WT DG LRH SYKGLRE QDNA V++L+
Sbjct: 306 GTADIVWVQPTLIAEIEFRAWTSDGKLRHPSYKGLRERQDNADVYQLD 353