Pairwise Alignments

Query, 566 a.a., ATP-dependent DNA helicase from Agrobacterium fabrum C58

Subject, 669 a.a., helicase a single-stranded DNA dependent ATPase from Pseudomonas putida KT2440

 Score = 52.4 bits (124), Expect = 6e-11
 Identities = 72/300 (24%), Positives = 120/300 (40%), Gaps = 49/300 (16%)

Query: 2   DLPAEPFVVSACAGSGKTKTAVHRVAAMQNRLTDRIGRILLLSFSNVAVETFQREYGMLV 61
           D    P +V A AGSGKT     ++A +      R   I+ ++F+N A    +     L+
Sbjct: 13  DYVGGPLLVLAGAGSGKTSVITRKIAHLIQNCGIRAQYIVAMTFTNKAAREMKERVATLL 72

Query: 62  TNDKRRIGPIVEIDTVDGFLTKNLLRPHGHRVMGCDRCPFLVDGREPFLKHFTVWDGSK- 120
              + R   +         L  N++R    R+           G +P    F+++D S  
Sbjct: 73  RPGEGRGLTVCTFHN----LGLNIIRKEHERL-----------GYKP---GFSIFDESDI 114

Query: 121 PARTADL---RITMDGG--KFSFRVGKWAGTAISRTPAVEAL----EKLGAVGAYTHESA 171
            A  +D+     + D G  +    +G W    +    A+E      E+  A+  YTH   
Sbjct: 115 KALLSDIMQKEYSGDDGIDEIKNMIGAWKNDLVLPPEALEKARNPREQTAAI-VYTHYQR 173

Query: 172 RYWAY-------------RLLNEVPFVLRAIARRYSHILVDEAQDIGTIHQALLEKISDA 218
              A+             +L  E P VL     R  ++LVDE QD       L++ +   
Sbjct: 174 TLKAFNAVDFDDLILQPVKLFQEHPEVLERWQNRVRYLLVDEYQDTNASQYLLVKMLIGM 233

Query: 219 GAELSLIGDVNQGIFEFTGATGDFL----GNYHSRAGVTAKELNRNFRSVPSIVKIANQL 274
             + +++GD +Q I+ + GA  + L     +Y S   V    L +N+RS   I++ AN L
Sbjct: 234 RNQFTVVGDDDQSIYAWRGARPENLMLLKEDYPSLKIVM---LEQNYRSTSRILRCANVL 290



 Score = 26.9 bits (58), Expect = 0.003
 Identities = 67/306 (21%), Positives = 116/306 (37%), Gaps = 65/306 (21%)

Query: 242 FLGNYHSRAGVTAKELNRNFRSVPSIVKIANQLSGRKDEPDRAA-------PDELSGAFY 294
           + GNY ++      EL      VP  +   N   GR++  D  A       PD+   A+ 
Sbjct: 349 YRGNYQAKL----IELKLQHHQVPYRLSGGNSFFGRQEVKDLMAYLRLLVNPDD-DNAYL 403

Query: 295 IAVDHDKRDEALLRFKKFLDKGSISQSKGVVVFRSSEVFNTWSGPGDPQGQGVIKSFVAS 354
             ++  +R+      +K    G+ +  +G+ ++ +SE      G G+             
Sbjct: 404 RVINVPRREIGSTTLEKL---GNYATERGISMYAASEEL----GLGEH----------LD 446

Query: 355 ARWRDQAKRFDQAFSQACAGIVGLLDDGHGDLLSLIKGQAVSQEL-RGVRREIWNFVKNP 413
           AR+ ++ +RF                DG    ++L    A   E+ R +  E W  ++  
Sbjct: 447 ARYTERLQRFKHWL------------DGVRHKVALEDPIAALHEMIRDIDYENW--IRQQ 492

Query: 414 ATGLPASNLDAVKEWHPQLVVRVKALLGRLEKQYGFVSGD-NLGNRLKKTALPNGPLVEA 472
                A+       W       V+AL   LEK      GD  + + + K  L +  ++E 
Sbjct: 493 TASDKAAEFRISNVWF-----LVEALKNTLEKDE---EGDMTIEDAIGKLVLRD--MLER 542

Query: 473 PEGDEPQNLQFRLSTVHKVKGESLDGVMYVAS-------RSNIEEFLAGTKTENGKIGYV 525
            + +E      ++ T+H  KG     V  +         RS+IE   A T  E  ++ YV
Sbjct: 543 QQEEEENAEGVQMMTLHASKGLEFPYVFIMGMEEEILPHRSSIE---ADTIEEERRLAYV 599

Query: 526 ALTRAR 531
            +TRAR
Sbjct: 600 GITRAR 605