Pairwise Alignments

Query, 346 a.a., phage-related integrase from Agrobacterium fabrum C58

Subject, 333 a.a., putative integrase/recombinase from Sphingobium sp. HT1-2

 Score = 94.0 bits (232), Expect = 5e-24
 Identities = 83/260 (31%), Positives = 123/260 (47%), Gaps = 34/260 (13%)

Query: 96  APSTVRRRLANWSTLTRWRGLHGAFASPALKSA---IRLAVRAVPRTRAR-KSAKA-VTG 150
           AP T+ RR+A  +   +  G    F SP  + A   I   +  V R  AR K  KA    
Sbjct: 78  APVTIGRRVAAINHHHKEAG----FPSPTARDAAGVIATMLAGVRRKYARRKEQKAPAEA 133

Query: 151 DVLAKLLATCESDSLRDLRDKAILMVAFASGGRRRSEIAGLRREQLTIEAPIETEGGPPL 210
           DVL  +LAT E   LR LRD+AIL V  A G  RRSE+A ++   L              
Sbjct: 134 DVLKAMLATIEGMGLRALRDRAILAVGMA-GAFRRSELAAMQLPDLAFAQS--------- 183

Query: 211 PSLAIHLGRTKTTSGEEDDTVFLTG----RPVEALNAWLAAAKID----------KGSVF 256
             L I + ++K    +    + +      RPV  L  WL AA +           +G+VF
Sbjct: 184 -GLRITIPQSKRDQEQVGQVIAIPEGRIIRPVNLLKHWLHAAGLSGLDPATGKPRQGAVF 242

Query: 257 RGIGRWGTVSRRALDPQSVNAILKQRAEMAGLEAGQFSAHGLRSGYLTEAANRGIPLPEA 316
           R + R   ++   +  ++V  ++K  A  AGL+   +S H LR+G+LTEAA++   L + 
Sbjct: 243 RRLTRSDALTDNPITDKTVARLVKTAAAAAGLDPSLYSGHSLRAGFLTEAASKRANLFKM 302

Query: 317 MEQSRHRSVQQASSYYNSAT 336
            + SRH+S+   + Y  SA+
Sbjct: 303 KDHSRHKSLDTVADYVRSAS 322