Pairwise Alignments

Query, 325 a.a., sugar ABC transporter permease from Agrobacterium fabrum C58

Subject, 332 a.a., predicted sugar transporter subunit: membrane component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score =  144 bits (362), Expect = 4e-39
 Identities = 96/303 (31%), Positives = 162/303 (53%), Gaps = 21/303 (6%)

Query: 14  VLLAAMIIIGLIN-PAFWSLDNIFGLLRSNVVIGIMALGVLLVMISGGIDVS---FTAFA 69
           V++A + ++  +N P F SL+N   +LR    IGI A  + L++ISG IDVS     AF 
Sbjct: 31  VVIAILYLVFSLNAPGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDVSVGPMVAFV 90

Query: 70  IAAMYLTVRSMVYLGYDGVLIPFVAATLIGLVLGAFNGLIIHRFRMIPLIVTLGTGSIVR 129
              +   ++  V L    +L+      L+G ++G   G++   F +   + TLG  S +R
Sbjct: 91  SVCLAFLLQFEVPLAVACLLV-----LLLGALMGTLAGVLRGVFNVPSFVATLGLWSALR 145

Query: 130 GLVLGLVGTSIVNINKMPKELIEFGKTDVISLTSATGSTFGLTAMFLVYLGLALVIHLIL 189
           G+ L +        N +P  + E    D +      G   G+    L+ + L  +   I 
Sbjct: 146 GMGLFMT-------NALPVPIDENEVLDWLG-----GQFLGVPVSALIMIVLFALFVFIS 193

Query: 190 TYTMIGRSVYAYGGSPEAAKRVGFNTGATIFFVYCIAGALAGFSGLLHSSMIWLANPRDF 249
             T  GRSV+A GG+  AA+  G N       ++ ++G LA  +G+L ++ +   N    
Sbjct: 194 RKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAA 253

Query: 250 VGLELDVIAAVVLGGASIFGGRGTVLGTLMGVFMLVMVKNSLIIMKVDTTWQRVVVGLII 309
            GLE DVIAAVV+GG ++ GGRG++ GTL+GV ++ ++ N L+++ +++ +Q+VV G+II
Sbjct: 254 NGLEFDVIAAVVVGGTALSGGRGSLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVII 313

Query: 310 IIA 312
           ++A
Sbjct: 314 VVA 316