Pairwise Alignments

Query, 348 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 319 a.a., ribose ABC transporter, periplasmic ribose-binding subunit from Pseudomonas putida KT2440

 Score = 54.3 bits (129), Expect = 4e-12
 Identities = 68/311 (21%), Positives = 127/311 (40%), Gaps = 35/311 (11%)

Query: 8   IALAATLSASAVFAQSAVDASKVNKELITTASGKKYTIATVVKVDGIAWFDRMRDGVEQF 67
           +ALA   S S     SA  A    K            +A V+K     +F  M DG + +
Sbjct: 10  LALAVISSLSLALPLSAAHAEDKPK------------VALVMKSLANEFFRTMEDGAKDY 57

Query: 68  KGDTGNDVWMVG---PSQADAAAQVQLVENLIAQGVDAIAIVPFSVEAVEPVLKKARDRG 124
           +    ++  ++     ++ D   Q+++VE ++  G  A+ I P   +A+   +KKA D+G
Sbjct: 58  QKTHADEFELIANGIKNETDTGEQIRIVEQMVNAGAKALVIAPADSKALVSAVKKAMDQG 117

Query: 125 IVVISHEASNIQNVDFDIEAFDNKAYGANLM-KELGKSMGGKGKYVATVGSLTSKSQMEW 183
           +VVI     NI N   D +   +K      +  +  K     G Y+A+   L +  Q+  
Sbjct: 118 VVVI-----NIDN-RLDPDLLKSKGISVPFVGPDNRKGARLVGDYLAS-QKLKAGDQVGI 170

Query: 184 IDGA-----VEYQKANFPE-MSQATERLETYDDANTDYTK----LKEAMTAYPDITGILG 233
           I+G       + + A F + M  A  ++ +    N +  K        +  YPD+  +L 
Sbjct: 171 IEGVSTTTNAQQRTAGFKDAMDAAQMKIVSVQSGNWEIDKGNAVAASMLNEYPDLKALLA 230

Query: 234 APMPTSAGAGRLIAEGGLSGKVFFSGTGLVSVAGEYIKNDNIQYIQFWDPAVAGYAMNML 293
                + GA   +   G +G+V   G   ++     +++  +  +   D A +  A+  +
Sbjct: 231 GNDSMALGAVSAVRAAGKTGQVQVVGYDNINAIKPMLEDGRV--LATLDQAASQQAVYGI 288

Query: 294 AVAVLEKKNEQ 304
             A+   K E+
Sbjct: 289 QAALKMVKGEK 299