Pairwise Alignments

Query, 348 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 313 a.a., ABC transporter, substrate binding protein (ribose) from Agrobacterium fabrum C58

 Score = 77.4 bits (189), Expect = 5e-19
 Identities = 84/344 (24%), Positives = 143/344 (41%), Gaps = 48/344 (13%)

Query: 8   IALAATLSASAVFAQSAVDASKVNKELITTASGKKYTIATVVKVDGIAWFDRMRDGVEQ- 66
           I  A   SA A+++ S V A +               IA +VK     ++  ++ G +  
Sbjct: 4   ITTALLTSAIALWSVSTVQAGE---------------IAVIVKTVNSTFWQNVQKGADAA 48

Query: 67  FKGDTGNDVWMVGPSQADAAA-QVQLVENLIAQGVDAIAIVPFSVEAVEPVLKKARDRGI 125
            K  +GN +   GP+   A A QV +VEN I + V  I + P   +A+ P +KKA +  I
Sbjct: 49  MKNSSGNTMTFQGPAAESAIADQVNMVENAINRKVAGIVLAPSDPDALVPAVKKAWEARI 108

Query: 126 VVISHEASNIQNVDFDIEAF---DNKAYGANLMKELGKSMGGKGKYVATVGSLTSKSQME 182
            V+  ++   +  +   ++F   DNK  G    + L   +G +GK         + S++ 
Sbjct: 109 PVVLIDSQLAKGSEQYYQSFLATDNKKAGELAAQALIDKVGTEGKIAVMSYVAGAGSEIG 168

Query: 183 WIDGAVEYQKANFPEMSQATERLETYDDANTDYTKLKEAMTAYPDITGILGAPMPTSAGA 242
            + G  +Y + +     Q      +     T   +  + + A  D+ GI GA  PT+ G 
Sbjct: 169 RVGGFTDYIQMH--SKLQIVGPFYSQSQMATALNQTTDVLAANSDLKGIFGANEPTAIGV 226

Query: 243 GRLIAEGGLSGKVFFSGTGLVSVAGEYIKNDNIQYIQFWDPAVAGYAMNMLAVAVLEKKN 302
           GR +A+ G +GKV   G         +  N ++Q     D  +AG               
Sbjct: 227 GRALAQSGKAGKVIAMG---------FDGNQDLQSF-VKDGTLAGIV------------- 263

Query: 303 EQIKAGLNMGLPGYESLL-VPDASKPHLLYGAGWVGVTKENMDK 345
             ++    MG  G E++  + +  K       G V VTK+N++K
Sbjct: 264 --VQGSYQMGEKGVETVTKLINKEKVEKFVDTGVVVVTKDNIEK 305