Pairwise Alignments

Query, 331 a.a., sugar ABC transporter permease from Agrobacterium fabrum C58

Subject, 331 a.a., D-ribose ABC transporter - permease subunit from Pseudomonas putida KT2440

 Score =  130 bits (326), Expect = 6e-35
 Identities = 92/313 (29%), Positives = 161/313 (51%), Gaps = 12/313 (3%)

Query: 5   IRKFNAIFG-ADMAGPVIALIAVMLIFGTFADNFLSLATFGSVAFQLPELGLLTLAMLLP 63
           +R+    FG     G   AL+A++++F   + +F S  TF ++A Q+P+L +L + M   
Sbjct: 14  VRRSGTYFGLGTYLGLAGALLAMIVLFSFLSSHFWSYGTFSTLANQIPDLMVLAVGMTFV 73

Query: 64  LLTGGINLSVTFAANLSGLAAAWVLQA--HGGVDAPPSAFLFACLAALVTGGAAGAMTGA 121
           L+ GGI+LSV    ++  LAA+ V  A    G    PSA L   +AAL     AG++TG 
Sbjct: 74  LIIGGIDLSV---GSVLALAASTVSVAILGWGWGVLPSALLGMAVAAL-----AGSITGG 125

Query: 122 AIAYTRAHPILVTLSMMIFLRGLGEFLTRGGDVSGFPAYMAPLGHGTLLGLPIPLLIFIV 181
                R    +V+L ++   RGL    T         AY A   +    G+    +I ++
Sbjct: 126 VTVAWRIPSFIVSLGVLEMARGLAYQFTDSRTAYIGDAY-AWFSNPVAFGVSPAFIIALL 184

Query: 182 CVGIWHVLLTRTKLGFGLLMIGSNIEAARYSGLNTRKIQVLVYTLSGLMCAVAGIIMLAR 241
            + +  ++LTRT  G  L+ IG+N EA R +G++ R  +VLV+ L GL+  +A +  ++R
Sbjct: 185 VIVLAQLVLTRTVFGRYLIGIGTNEEAVRLAGIDPRPYKVLVFALMGLLAGLAALFQISR 244

Query: 242 FNSVRVGHGESYLLITVLAAFLGGINPFGGFGRVLPVFVALIVLQLLSSGLNLLGANQHL 301
             +     G    L  + A  +GG +  GG G V+  F  ++++ +L++GL  +GA++  
Sbjct: 245 LEAADPNAGSGLELQVIAAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGASEPT 304

Query: 302 ATALWGVLMIVVM 314
              + G ++++ +
Sbjct: 305 KRIITGAVIVIAV 317