Pairwise Alignments

Query, 284 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 340 a.a., autoinducer 2 ABC transporter substrate-binding protein LsrB from Escherichia coli ECRC98

 Score = 84.7 bits (208), Expect = 3e-21
 Identities = 70/264 (26%), Positives = 121/264 (45%), Gaps = 6/264 (2%)

Query: 4   GIKEQSNKLGVDGFMVGPTSADPALQVRAIEDLIAQKVDFIGVVPNDAKVLEPVLKKAQA 63
           G ++   +LGVD    GPT    + QV+ I + + Q  + I V       L P LK+A  
Sbjct: 48  GAQQAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQ 107

Query: 64  AGIKVITHES--PEQLGADWDFELASAKGFGEAHGKLLGEKMGGKGSYAVFVGSLTVPLH 121
            G++V+T +S    +  + +  +   A+  G        +    K   A F  S TV   
Sbjct: 108 RGVRVLTWDSDTKPECRSYYINQGTPAQLGGMLVDMAARQVNKDKAKVAFFYSSPTVTDQ 167

Query: 122 NAWADAAIAYIKANYPDMKLVGDRYGVAEDLDKSRSTALDLMSANADLKGFLAFGSQGPI 181
           N W   A A I   +P  ++V  ++G   D  KS  TA  ++ A +DL   +A  +    
Sbjct: 168 NQWVKEAKAKIAKEHPGWEIVTTQFGY-NDATKSLQTAEGILKAYSDLDAIIAPDANALP 226

Query: 182 GAGRAVEERRKDGKVFVIGPFSPGQGAKLIKSGALTGGFMWNPKQAGEVFITLADRIAKG 241
            A +A E  + D KV ++G  +P      ++ G +    +W+  Q G++ + +AD + K 
Sbjct: 227 AAAQAAENLKND-KVAIVGFSTPNVMRPYVERGTVKEFGLWDVVQQGKISVYVADALLKK 285

Query: 242 ETPKAGD--TIEGLGTIDPKGNTI 263
            + K GD   I+G+G ++   N++
Sbjct: 286 GSMKTGDKLDIQGVGQVEVSPNSV 309