Pairwise Alignments

Query, 627 a.a., transcriptional regulator from Agrobacterium fabrum C58

Subject, 636 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  285 bits (729), Expect = 4e-81
 Identities = 220/616 (35%), Positives = 310/616 (50%), Gaps = 44/616 (7%)

Query: 28  SWRRCLDTYQLDPTKAREAVIVSETRLREHRQQAEDLLHIARSGLERLYRQVAEQNYVLL 87
           SWRR L  + LD  +  +  +  E        Q  DL  +       +     E +Y++ 
Sbjct: 41  SWRRSLG-HGLDCLQGEQVGLGLE--------QGHDLRLLLERNRLLIDAVTPELDYLVA 91

Query: 88  LSDRQGVTVEFLGDPSFN--------NNLRKAGL---YLGSEWSEPRAGTCAVGACIATG 136
              + G+ +  LGD   N        + L++ GL   + GS WSE   GT A+G  +  G
Sbjct: 92  RQGKAGIVI--LGDAQANVLAIEGQKHVLQREGLRDLHPGSCWSESLRGTNAIGTAVVEG 149

Query: 137 ESLTIHQTDHFDVTHTPLSCTAAPIYDTQGALTAVLDISLLSSPILKTSQNMARHLVSST 196
               I+  +H+    +P SCT+ P+ D +G +  VLDI+     ++   Q+    L+ + 
Sbjct: 150 RPTLINCGEHYLDRLSPFSCTSVPLRDPRGEVIGVLDIT--REGVMAQPQDSLSTLMLAA 207

Query: 197 VRRIELANLMASSRHDLVLRFAGAPEFLDVDPEAALSVDGSGRITGMTHAAARLLAASRG 256
              IE           LVL F   P++L+      L++   G +      A +LL   R 
Sbjct: 208 -GNIESRLFGLCHPDQLVLAFHSRPQYLNSAWHGLLALSLDGEVLAANDGACQLLQVPRH 266

Query: 257 -LDWRMPERLLGQRVEEFFEAGLDELASLTRSSLPQDRRIVVRDGTVLYAHAIEPQQRRS 315
            L  R    LLG+R   F    +  L     SS+   +         L  H        S
Sbjct: 267 ELIGRRSTDLLGERSPAF----IARLWQGGVSSVQTAKGEFYFRALQLPRHGRVTPSTPS 322

Query: 316 SVPLARSKPQPVTERI-GGDGPAVRNLRRKVEKLSPARLPILLQGQTGTGKEHLARIIHD 374
           S P A SK  P  + + GGD    RNLR   + L    LP+LL G+TGTGKE +AR +H 
Sbjct: 323 SKP-ALSKQSPALDALAGGDQRLARNLRMARQGLGNG-LPVLLLGETGTGKEVVARALHQ 380

Query: 375 ASGVSGR-FVAVNCAAIPEQLIESELFGYLPGAFTGALAKGRKGLVEEAQGGTLFLDEIG 433
           AS  + + FVAVNCAAIPE LIESELFGY  GAFTG+   G  G + +A GGTLFLDEIG
Sbjct: 381 ASPRADKPFVAVNCAAIPEGLIESELFGYREGAFTGSRRGGMVGRLMQAHGGTLFLDEIG 440

Query: 434 DMPFAAQSRLLRVLAEGEVLPVGGSTPQKVDFRVISASHRPLNDMVRTGAFREDLYYRLN 493
           DMP A Q+RLLRVL E  V P+G    Q +D  +I A+HR L  +V+   FREDL+YR+N
Sbjct: 441 DMPLALQARLLRVLQERRVAPLGAGDEQDIDVALICATHRDLKRLVQEQHFREDLFYRVN 500

Query: 494 AAVLTLPALSERDDFPWLLDRILEKHGMPGRPLTLSNAARLTILHHRWPGNIRELDNAIA 553
              L LPAL ERDD   ++  +L+K     R +TL  A    +    WPGNIR+L+  + 
Sbjct: 501 GVSLRLPALRERDDLAAIIQGLLDK--ADARGVTLDPALTALLEGFDWPGNIRQLEMVVR 558

Query: 554 FAAALCDDG--LITVEDLPEQL------TPASSTPMIDSRGTDLRALLAACNGNISEAAR 605
            A A+ +DG  ++T++ L + L      + A S  + DS    +R  LA   GN+S AA 
Sbjct: 559 TALAMREDGEQVLTLDHLTDCLLDELASSAAPSGSLKDSELEQIRGALARHQGNVSAAAA 618

Query: 606 RLGVDRTTLHRRMRRL 621
            LG+ R TL+R++++L
Sbjct: 619 ALGISRATLYRKLKQL 634