Pairwise Alignments

Query, 627 a.a., transcriptional regulator from Agrobacterium fabrum C58

Subject, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  394 bits (1012), Expect = e-114
 Identities = 241/672 (35%), Positives = 361/672 (53%), Gaps = 61/672 (9%)

Query: 3   FSDHIKEIETVGQGR--NTGRDAVVLESWRRCLDTYQLDPTKAREAVIVSETRLREHRQQ 60
           F+ H +++ +V  G     G D  +  SW RCL+ Y LDP      V++   RL E R++
Sbjct: 6   FTRHARQVHSVAHGGAGEGGSDPSIARSWLRCLEDYHLDPAVIEAPVVLEHGRLLESRER 65

Query: 61  AEDLLHIARSGLERLYRQVAEQNYVLLLSDRQGVTVEFLGDPSFNNNLRKAGLYLGSEWS 120
              +L IA   +  L++Q++   + +LL+D +GV +  +  P+   +  +AGL+LG++WS
Sbjct: 66  LHQVLQIADHEMNSLHQQLSGAGHAVLLTDARGVILNCVSAPAERRSFERAGLWLGADWS 125

Query: 121 EPRAGTCAVGACIATGESLTIHQTDHFDVTHTPLSCTAAPIYDTQGALTAVLDISLLSSP 180
           E R GT  +G C+   ++LTIHQ +HF   HT L+C+A+P++D  G L AVLD+S     
Sbjct: 126 EAREGTNGIGTCLVERQALTIHQNEHFRGRHTGLTCSASPVFDPHGDLLAVLDVSSARPD 185

Query: 181 ILKTSQNMARHLVSSTVRRIELANLMASSRHDLVLRFAGAPEFLDVDPEAALSVDGSGRI 240
           + + SQ     LV+ + + IE    +       +LRF    E + +  E  L+ DG GRI
Sbjct: 186 VSRQSQFHTMALVNLSAKMIESCYFLRHFEQQWLLRFHLQAESVGLFSEGLLAFDGDGRI 245

Query: 241 TGMTHAAARLLAASRGLDWRMPERLLGQRVEEFFEAGLDELASLTRSSLPQDRRIVVRDG 300
                +A  LL   RG        +LG+ +E FF    DE+ S           +   DG
Sbjct: 246 CAANQSALNLLGTVRG-------GVLGKPLECFFACSHDEMFSRATPGGSAVWPLRTLDG 298

Query: 301 TVLYAHAIEPQQRRS--SVPLARSKPQ-PVTERIGGDGPAVRNLRRKVEKLSPARLPILL 357
             ++A ++  Q R    SVP A+ +P   V   +    PA++N  R+  ++    +P+LL
Sbjct: 299 RQVFA-SLRGQARAPVWSVPAAQPRPAGEVEPLVCLLDPALQNDFRRSVRVFERDVPLLL 357

Query: 358 QGQTGTGKEHLARIIHDASGVSGR-FVAVNCAAIPEQLIESELFGYLPGAFTGALAKGRK 416
           +G+TG GKE  A+ +H AS   G+ FVA+NCA+IPE LIESELFGY  G+FTGA  +G +
Sbjct: 358 RGETGCGKEAFAQAVHQASERRGKPFVAINCASIPESLIESELFGYRGGSFTGARKEGMR 417

Query: 417 GLVEEAQGGTLFLDEIGDMPFAAQSRLLRVLAEGEVLPVGGSTPQKVDFRVISASHRPLN 476
           G + +A GGTL LDEIGDMP A Q+RLLRVL E +V+P+GG  PQ VD R++SA+HR L 
Sbjct: 418 GKLLQADGGTLLLDEIGDMPLALQTRLLRVLEERQVVPIGGE-PQAVDVRIVSATHRDLL 476

Query: 477 DMVRTGAFREDLYYRLNAAVLTLPALSERDDFPWLLDRILEKHGMPGRPLTLSNAARLTI 536
           + V  G+FREDLYYRLN   + LPA+ ER D   LLD +L +    G+ + +   AR  +
Sbjct: 477 ERVEQGSFREDLYYRLNGLEVALPAVRERSDKAQLLDFLLRQE-TQGQWIDIEPRARQAL 535

Query: 537 LHHRWPGNIRELDNAIAFAAALCDDGLITVEDLPEQL----------------------- 573
           L   WPGN+R++ N +    ALC+D  IT  DLP  +                       
Sbjct: 536 LAFNWPGNVRQMRNVLRTLVALCEDARITFADLPAVIRTSPPLAGVGEPAKMSDQEMEGE 595

Query: 574 ----------------------TPASSTPMIDSRGTDLRALLAACNGNISEAARRLGVDR 611
                                   A +  ++D+    L+ +L A + +++  A  LG+ R
Sbjct: 596 GVALVRGQARSHRSGGAAEIEGESAGTEVLLDAERQALKEVLEAKHWHLTRVAEHLGISR 655

Query: 612 TTLHRRMRRLGI 623
            TL+R++R+ GI
Sbjct: 656 NTLYRKLRKHGI 667