Pairwise Alignments

Query, 812 a.a., fimbrial usher protein from Agrobacterium fabrum C58

Subject, 831 a.a., Type 1 pili subunit FimD from Pseudomonas putida KT2440

 Score = 95.5 bits (236), Expect = 1e-23
 Identities = 141/569 (24%), Positives = 228/569 (40%), Gaps = 38/569 (6%)

Query: 244 RPTRFGGLQIRRNFDLRPDIVTMPMPEFSGSAAVPSTVDVYVNNIRRLSQDVPEGPFSIT 303
           R     G+++  +  +  D      P   G A   + V+++ +     S  V  GP++I 
Sbjct: 262 RSVPISGVRVASDMGMLADNQRGYAPIIRGVAQSRAKVEIWQHGYPIYSTYVSAGPYAID 321

Query: 304 NLPVISGAGNARLVVRDALGREIVSETPFYTSPDLLAQGLVDFSAELGFARRNYGTSSFD 363
           +L   +G+G   +VV +A G+      P+ T  +LL  G+  +SA +G     Y  SS D
Sbjct: 322 DLST-AGSGELEVVVTEADGQVRRFIQPYSTMSNLLRPGVWRYSATVG----RYNPSS-D 375

Query: 364 YDDRLLGSATVRYGVSDGFTVEGHAEGGEDFYNVG-LGGVFTLGAHGLAA--LSGASSRF 420
            +  LL   T+  G     TV G     E FY  G LG    LG  G  A  ++ ASS  
Sbjct: 376 LETPLLWQGTLAVGSYWDTTVYGGLMASE-FYRAGNLGFSKDLGHLGAVAFDVTQASSAI 434

Query: 421 GDESGYQLSASVEAELLGVRLNARSQRAFGDYN-------DMASVSANTSKIQPISGLLS 473
            +    ++  S  A         ++   F  Y        D   V    S+    SG   
Sbjct: 435 DNAHEREVQGSSYALKYAKAFTTQTNLRFAGYRYSTQGYRDFDEVVRQRSQDTTFSG--- 491

Query: 474 VRPPRALDQISVSTQLGFDETSLNFSYTQLETF----DERRSRLLGLSATRPFGENGDIF 529
               R+  + SV   LG   +SL  + +Q + +     +R+ +    +  R  G N    
Sbjct: 492 --SRRSRLEASVHQSLG-RTSSLTLTLSQQDYWRSNATQRQYQFNFNTQHRGVGYNLFAS 548

Query: 530 VTAYKDLEDSNSYGIFAGLSWSFGGGVSGSAGMSSNADGYSLTAEVVKSEEQAEGSYGWR 589
            +      +   +G+   +   FG   + +  +  NA+GYS  A +  S+     SY   
Sbjct: 549 QSLTDRYGNDRQFGLSVTVPLHFGHRANATFDLQHNANGYSQRATLSGSDSARALSYSTS 608

Query: 590 LRGALGGNDIASASGSYRGTAARVSAGIDQFNRTTQAYAQIEGSIAVAGGDVFIGNRIDD 649
           L         A+ S  ++   A VSAG  + +          G++ +    +  G  + D
Sbjct: 609 LSRDEHARKTAALSLGHQAPYASVSAGYTEADNYRSLSLNASGAVLLHADGLEFGRYLGD 668

Query: 650 AFAVVDAGAPGV-DILLENRPIGQTNRRGKILLPNLRSYDVNNITLDPSNLPVDARIDHT 708
             A+++   PGV ++ L+N    +TN RG  LLP L+ Y  N++ L+   L  D  ID+ 
Sbjct: 669 TAALIEV--PGVANVGLQNATGTRTNSRGYALLPYLQPYRTNSVVLETDRLDPDVEIDNG 726

Query: 709 KQTVRPTERAGAVVNFKVETEGQVALV-TLKAESGDFIETGSTGTID-GKREFIVGYDGQ 766
              V P  R GAVV  + E      LV TL    G  +  G+    + G +  +VG  G 
Sbjct: 727 IAQVVP--RQGAVVKHRFEARRVSRLVLTLHDTQGQPLPFGAQVLAENGTQLGMVGQAGL 784

Query: 767 AYLDNIGATHRLHIT---QPTRGKCEAEI 792
             L N      L ++   QP  G C+  +
Sbjct: 785 VMLTNPSQEQPLQVSWGEQPNAG-CQVHL 812