Pairwise Alignments

Query, 268 a.a., dipeptide ABC transporter permease from Agrobacterium fabrum C58

Subject, 290 a.a., putative Opine ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  231 bits (588), Expect = 2e-65
 Identities = 116/264 (43%), Positives = 174/264 (65%)

Query: 3   RNKSALAGLIIVLFFAVLAIAAPILPIADPVATSWSAIRKAPSAAHWLGTDDLGRDILSR 62
           +N+ +  G+ +++   ++A+ AP++   DP+  + +   + PSA  WLGTD  GRD+LSR
Sbjct: 21  QNRLSWIGIGLLVMIVLVALFAPLIAPYDPLQQNIAYRLEPPSAEFWLGTDTYGRDVLSR 80

Query: 63  MIYGARASLMAGVVSVMIAVVIGVPFGLIAGYFGGWVDMVISRITEALLAMPFLIMAIAL 122
           +IYG R SL+ G V+VMIA+V+G   G+IAGY GG  D +I+   + LL+ P L++ + +
Sbjct: 81  LIYGTRVSLLVGFVAVMIAMVVGSALGVIAGYVGGITDRLITGFVDVLLSFPTLLLGLMV 140

Query: 123 AAFLGPSLTNAMIAIGLSAMPIFVRLTRGQVLAVKMEDYVEGARSIGLNHIDIMTRYILP 182
           AA LG SL N +IAI ++ +  FVR+ R   +A+K  D+VE  RS+G     +MT +ILP
Sbjct: 141 AAMLGASLENLIIAIAITEIAPFVRIARAPTIALKQRDFVEAGRSLGYGPGRLMTVHILP 200

Query: 183 NVFAPIIVQATLTVATAIIAEASLSFLGLGQQAPAPSWGSMLNTAKNFLSQAPWMTLWPG 242
           N+ + ++V   L +ATAI  EASLSF+GLG   PAP+WGSM+      +  A W+T++P 
Sbjct: 201 NMISEVLVLGALWMATAIRTEASLSFIGLGVPPPAPTWGSMIREGFENILDAWWLTVFPS 260

Query: 243 IAIFLVVIGFNLLGDGLRDALDPR 266
           +AI L V+  +LLGD LRDA DP+
Sbjct: 261 LAILLTVLALSLLGDALRDANDPK 284