Pairwise Alignments

Query, 502 a.a., dipeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 534 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  172 bits (436), Expect = 3e-47
 Identities = 143/536 (26%), Positives = 245/536 (45%), Gaps = 50/536 (9%)

Query: 6   TLTAALLASAVLAVPALSS-----ELRIGLNDDADVLDPAQSRTFVGRIVYTAMCDKLVD 60
           T+ +A+ A+++LAV  +        L           D AQ  T         + ++LV+
Sbjct: 5   TVLSAMFATSLLAVATMGHAADKRSLVFCSEGSPAGFDTAQYTTATDNDAAEPLYNRLVE 64

Query: 61  ISQ-DMKIVPQLATEWAWSEGGKVLTMKIRDGVKFHDGETL------DAAAVVATIERNM 113
             + +  +VP LAT+W  S  G   T  +R+GVKFH  +        +A  V+ T  R +
Sbjct: 65  FEKGETGVVPALATKWDISPDGMTYTFHLREGVKFHSNKEFKPTRDFNADDVLFTFNRML 124

Query: 114 TLPESRRK------------SELSSVEKVEATGPLDVKFTLKTPDVTLLAQLSDRAGMIV 161
                 RK            S   ++ KVE T P  V  TL T D   +  ++     I+
Sbjct: 125 DPDHPFRKAYPTEFPYFNGMSLNKNIAKVEKTDPHTVVMTLNTVDAAFIQNIAMSFAAIL 184

Query: 162 APKAAKEL-----GANFGSKPVCAGPFKFVERIQQD---RIVLEKFADYWDKDKILVDKI 213
           + + A++L      ++   KP+  GPF F +R Q+D   R V  K   YWD  ++ +D++
Sbjct: 185 SAEYAEQLLKAGKPSDINQKPIGTGPFVF-QRYQKDSQIRYVANK--QYWDPSRVKLDQL 241

Query: 214 VYLPIPDTTVKLANLRAGDLDIAERISASDAESVKNDPKLTYADVIGPGYMAMYVNINNG 273
           ++    D +V++  L+AG+  +      +D +++K DP L    +  PG+   Y+  N  
Sbjct: 242 IFAINTDASVRVQKLKAGECQVTLHPRPADVDALKADPNLKL--LTKPGFNLGYIAYNVR 299

Query: 274 ARADNPLGKDKRLRQAFSYAIDREAIGQIVFEGTSKAGNQSFPPTSPWFNQNLPVPTRDI 333
            +  + L     +RQA   A+++++I   V++G  +    + PPT   ++ ++     + 
Sbjct: 300 HKPFDQL----EVRQALDMAVNKQSILNAVYQGAGQLAVNAMPPTQWSYDDSIKDAAYNP 355

Query: 334 DKAKQLMKEAGY-ETLDVEL-----QHANNTTQTQMMQVIQSMVAEAGFNVTLKATEFAT 387
           +KAK+L+K AG  E  ++ L     Q   N     M +++QS  A+ G  V + + E+  
Sbjct: 356 EKAKELLKAAGVKEGTEITLWAMPVQRPYNPNAKLMAEMLQSDWAKIGLKVKIVSYEWGE 415

Query: 388 LLSEQTAGNYQLSRSDWSG-RIDPDGNLHQFVTCK--GGINDVKYCNPEVDKLLNEARAS 444
            +     G + +S   W+G   DPD  L    +C   GG N   +C+P  DKL+ +A+  
Sbjct: 416 YIKRTKNGEHDVSLIGWTGDNGDPDNWLGTLYSCDAIGGNNYSMWCDPAYDKLIKQAKVV 475

Query: 445 TEDAVRKEKYDAASVILNDDMPIIYLGHQPYAYAISNKVKGWAPSPDGMIRLLGVS 500
           T+   R   Y  A  +L   +PI  + H      +S KV+G+  SP G     GVS
Sbjct: 476 TDREQRTVLYKQAQQLLKQQVPITPVAHSTVNQPLSAKVEGFKVSPFGRNVFSGVS 531