Pairwise Alignments

Query, 502 a.a., dipeptide ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 544 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  145 bits (366), Expect = 4e-39
 Identities = 125/475 (26%), Positives = 210/475 (44%), Gaps = 52/475 (10%)

Query: 56  DKLVDISQDM-KIVPQLATEWAWSEGGKVLTMKIRDGVKFHDGE------TLDAAAVVAT 108
           ++LVD      +I P LA  W  S  G   T  +R GVKFH  +       L+A  V+ +
Sbjct: 70  NRLVDFKPGTTEIQPALAERWDISADGLTYTFHLRQGVKFHTTDYFKPTRDLNADDVLWS 129

Query: 109 IERNMT---------------LPESRRKSELSSVEKVEATGPLDVKFTLKTPDVTLLAQL 153
           + R +                      K  L SV K +      V  TL  P+   L  +
Sbjct: 130 LNRQLDPNHPWHDKTSVGYPYFESMGFKELLKSVSKADEH---TVVITLSRPEAPFLRDM 186

Query: 154 SDRAGMIVAPKAAKEL-----GANFGSKPVCAGPFKFVERIQQDRIVLEKFADYWDKDKI 208
           +     I + +   +L      A   SKP+  GPF F    +  ++  +   DY+ + K 
Sbjct: 187 AMGFTSIYSAEYGDQLLKSGKTAELNSKPIGTGPFIFQRYNKDAQVRFKPNPDYF-RGKP 245

Query: 209 LVDKIVYLPIPDTTVKLANLRAGDLDIAERISASDAESVKNDPKLTYADV--IGPGYMAM 266
             D +V+    D+ V+L  LRA +  +A      D  S+K DPKL   ++  +  GY+AM
Sbjct: 246 PADALVFAIAIDSNVRLQKLRANECQVALYPKPDDVPSIKQDPKLKVEEIEALVTGYIAM 305

Query: 267 YVNINNGARADNPLGKDKRLRQAFSYAIDREA-IGQIVFEGTSKAGNQSFPPTSPWFNQN 325
                      +    D R+R+A + A DR+  + Q+  +G +  G   +PPT   +N +
Sbjct: 306 --------NTQHKYLNDVRVRKAINMAFDRQTHVDQLFGKGNALVGVNPYPPTMIGYNTH 357

Query: 326 LPVPTRDIDKAKQLMKEAGY-ETLDVELQHAN-----NTTQTQMMQVIQSMVAEAGFNVT 379
              P RD+DKA+ L+ +AG  E   + L   N     N       +++Q+ + + G  + 
Sbjct: 358 NQNPPRDLDKARALLSQAGVPEGTVITLFTRNGGGPTNPNPRLSAEMLQADLKQIGLKLD 417

Query: 380 LKATEFATLLSEQTAGNYQLSRSDWSG-RIDPDGNLHQFVTC---KGGINDVKYCNPEVD 435
           ++  E+A +L     G   L  + W+G   DPD  L   ++C   K G N  ++CNP+  
Sbjct: 418 IRVMEWAEMLRRAKNGEADLVSTGWAGDNGDPDNFLSPLLSCDAVKSGENYARWCNPKFQ 477

Query: 436 KLLNEARASTEDAVRKEKYDAASVILNDDMPIIYLGHQPYAYAISNKVKGWAPSP 490
           +L++ AR   ++  R   Y+ A  + +D+ P I + H     A+ + V+G+  +P
Sbjct: 478 ELISRAREVIDNDERARLYNEALKVYDDEQPWISMAHPKMFTAMRDNVEGYVINP 532