Pairwise Alignments

Query, 492 a.a., LuxR family transcriptional regulator from Agrobacterium fabrum C58

Subject, 1098 a.a., PAS/PAC/GAF sensor-containing diguanylate cyclase/phosphodiesterase from Pseudomonas putida KT2440

 Score =  114 bits (286), Expect = 1e-29
 Identities = 76/278 (27%), Positives = 140/278 (50%), Gaps = 8/278 (2%)

Query: 113 RGLILEDAGAKPDVLVLIIRDETPRFEA-EARFESAFNANPAPGLICRLEDERFIRVNQG 171
           +G+ L  AG   D+   + R++  R  A E +F S F  +P P  + R +  +FI +N  
Sbjct: 384 QGIPLRMAGTLLDITDQVEREQ--RLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPA 441

Query: 172 FLEMTGFSREEIIGVSVEELGLFSECETGEDALKRLHEGRIIRQREALIPIPGGDRLV-I 230
           F +  G+S  +++G + EE+GL++E       ++++   + +     ++    GD L  +
Sbjct: 442 FTQTFGWSSAQVLGRTAEEIGLWAESVERAKRIEQVIREQALSNVAVVLNHRNGDPLTCV 501

Query: 231 VAGETIAVAEEPCMLFTFADLDGRRKAQNALRQSEERFFKSFRLSPVPAAISRLDDFVLT 290
           ++   I V ++PC + T  D+  +++A+ AL+ SEE+F K+F  SP    I+        
Sbjct: 502 ISSRLITVDDQPCSVTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITERHSGRYL 561

Query: 291 EVNDAFLTLCGRKEAEVVGKTASELRLWDDVPARRDIEKRLKDNIPIRNEAM--RMNLAD 348
           EVND F  L G    EV+G T  E+ +W D   R  +   L++   + +  M  R    D
Sbjct: 562 EVNDGFCRLTGYSTDEVIGHTVYEIGIWADDKQRSALLAELRERGRVHHREMLGRNKRGD 621

Query: 349 DGTAECIVSAERAEINDQLCVIWAIQDVTERRRSENEL 386
             T E  VS E   +N+  C++   +DV++ + ++ ++
Sbjct: 622 ILTVE--VSVEPITLNEVDCLLLTARDVSQLKNAQAQI 657



 Score = 79.7 bits (195), Expect = 5e-19
 Identities = 49/170 (28%), Positives = 91/170 (53%), Gaps = 4/170 (2%)

Query: 244 MLFTFADLDGRRKAQNALRQSEERFFKSFRLSPVPAAISRLDDFVLTEVNDAFLTLCGRK 303
           M  T  D+  + + +  L  SEE+F   F++SP P  ++R D     E+N AF    G  
Sbjct: 390 MAGTLLDITDQVEREQRLSASEEKFASLFQVSPDPICVTRQDTGQFIEINPAFTQTFGWS 449

Query: 304 EAEVVGKTASELRLW-DDVPARRDIEKRLKDNIPIRNEAMRMNLADDGTAECIVSAERAE 362
            A+V+G+TA E+ LW + V   + IE+ +++   + N A+ +N  +     C++S+    
Sbjct: 450 SAQVLGRTAEEIGLWAESVERAKRIEQVIREQ-ALSNVAVVLNHRNGDPLTCVISSRLIT 508

Query: 363 INDQLCVIWAIQDVTERRRSENELIEAIESVMT--DTSWFSRTVVERLAG 410
           ++DQ C +  ++D+T+++R+E  L  + E       +S  + T+ ER +G
Sbjct: 509 VDDQPCSVTTLRDITQQQRAEAALKSSEEKFAKAFHSSPDAITITERHSG 558



 Score = 62.0 bits (149), Expect = 1e-13
 Identities = 42/150 (28%), Positives = 72/150 (48%)

Query: 242 PCMLFTFADLDGRRKAQNALRQSEERFFKSFRLSPVPAAISRLDDFVLTEVNDAFLTLCG 301
           P M+    ++  +R+ + AL  SE+RF   F LSP    ++R  D ++ EVN  F  + G
Sbjct: 134 PQMIGVIREITRQRERETALINSEKRFATLFHLSPNAILLTRRRDGMIFEVNQHFEDMFG 193

Query: 302 RKEAEVVGKTASELRLWDDVPARRDIEKRLKDNIPIRNEAMRMNLADDGTAECIVSAERA 361
              ++V+GKT+ EL LW +   R  I +  + N       ++         + I+  +  
Sbjct: 194 WPGSQVIGKTSLELGLWVNPEQRHQIVESTRANGGPLIMEVQFRATSGKVHDGILCTQGI 253

Query: 362 EINDQLCVIWAIQDVTERRRSENELIEAIE 391
           E+     +I    D TER+R+E  L ++ E
Sbjct: 254 ELEGVTFLISTFVDTTERKRAEQALKDSQE 283



 Score = 53.9 bits (128), Expect = 3e-11
 Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 11/165 (6%)

Query: 112 VRGLILEDAGAKPDVLVLIIRD-------ETPRFEAEARFESAFNANPAPGLICRLEDER 164
           + G +  D   +P  ++ +IR+       ET    +E RF + F+ +P   L+ R  D  
Sbjct: 122 INGSLTHDPHGRPQ-MIGVIREITRQRERETALINSEKRFATLFHLSPNAILLTRRRDGM 180

Query: 165 FIRVNQGFLEMTGFSREEIIGVSVEELGLFSECETGEDALK--RLHEGRIIRQREALIPI 222
              VNQ F +M G+   ++IG +  ELGL+   E     ++  R + G +I + +     
Sbjct: 181 IFEVNQHFEDMFGWPGSQVIGKTSLELGLWVNPEQRHQIVESTRANGGPLIMEVQ-FRAT 239

Query: 223 PGGDRLVIVAGETIAVAEEPCMLFTFADLDGRRKAQNALRQSEER 267
            G     I+  + I +     ++ TF D   R++A+ AL+ S+ER
Sbjct: 240 SGKVHDGILCTQGIELEGVTFLISTFVDTTERKRAEQALKDSQER 284