Pairwise Alignments

Query, 324 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

Subject, 616 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  255 bits (652), Expect = 2e-72
 Identities = 122/265 (46%), Positives = 183/265 (69%)

Query: 5   VIDVRNLKVEFPGRRGTVTALSDISLSIRPGEILGVVGESGAGKSMTGLAIQGLLEKPGR 64
           V+ V+NL   F    G  + + ++S  I P E + +VGESG+GKS+T L+I  LL++   
Sbjct: 18  VLSVQNLTTSFRVDGGWKSVVRNMSFDIAPRETVAIVGESGSGKSVTSLSIMRLLDRKTS 77

Query: 65  IADGEIWLGSRRIDQLDDRAMESIRGREIGAIFQDPLTSLNPLFTVGAQLVETIRQHLPL 124
             +G++ LG R +  L +  M  +RG++I  IFQ+P+TSLNP+F +G Q+ E +  H  +
Sbjct: 78  RIEGKVMLGGRDLLALPEEEMRKVRGKDISMIFQEPMTSLNPIFPIGKQIAEALTVHQDI 137

Query: 125 SKADARARAIQLLRDVGIPSPADRIDHYPHQFSGGMRQRVVIALALSASPKLIIADEPTT 184
           S + A+A  I+LL  V IP+ A R   YPHQFSGGMRQRV+IA+AL++ PKL+IADEPTT
Sbjct: 138 SSSAAKAEVIRLLEKVRIPNAASRFGDYPHQFSGGMRQRVMIAMALASKPKLLIADEPTT 197

Query: 185 ALDVSIQAQIISLLRRLCKEKQTAVMLVTHDMGVIAEAADRVAVLYAGRLIEVGPVEQVL 244
           ALDV+IQ QI+ L+++L +E+  +V+ +THDMGV+AE ADR  V++ G ++E G  + + 
Sbjct: 198 ALDVTIQGQILDLIKQLQEEEGMSVLFITHDMGVVAEVADRTIVMFRGDVVETGTTDDIF 257

Query: 245 HEPRHPYTQGLMASIPSLGARVERL 269
           H  +HPYT+ L++++P LG+   RL
Sbjct: 258 HRGQHPYTRALLSAVPKLGSMRSRL 282



 Score =  189 bits (481), Expect = 1e-52
 Identities = 106/263 (40%), Positives = 158/263 (60%), Gaps = 14/263 (5%)

Query: 5   VIDVRNLKVEFP------GRR-GTVTALSDISLSIRPGEILGVVGESGAGKSMTGLAIQG 57
           ++ V++L   F       GR+ G V A+  +S  +  GE L +VGESG GKS TG +I  
Sbjct: 314 ILSVKDLTTRFDIRSGLFGRKSGAVHAVEKVSFDLAEGETLSLVGESGCGKSTTGRSITR 373

Query: 58  LLEKPGRIADGEIWLGSRRIDQLDDRAMESIRGREIGAIFQDPLTSLNPLFTVGAQLVET 117
           L+E       G + L    + +LD   + ++R R +  +FQDP  SL+P  +VG  ++E 
Sbjct: 374 LIEP----TSGNVTLDGYEVLKLDRTTLRTMR-RSVQMVFQDPFASLDPRMSVGTAIMEP 428

Query: 118 IRQHLPLSKADARARAIQLLRDVGIPSPADRIDHYPHQFSGGMRQRVVIALALSASPKLI 177
             +H    KA AR +A  LL  VG+ SP D +  +PH+FSGG RQR+ IA +L   PK+I
Sbjct: 429 FMEHRLGQKAQAREKAADLLEKVGL-SP-DMMKRFPHEFSGGQRQRIAIARSLMLDPKVI 486

Query: 178 IADEPTTALDVSIQAQIISLLRRLCKEKQTAVMLVTHDMGVIAEAADRVAVLYAGRLIEV 237
           +ADE  +ALDVSI+AQ+ +LL  L +    A + ++HDM V+   + RVAV+Y G ++E+
Sbjct: 487 VADEAVSALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEI 546

Query: 238 GPVEQVLHEPRHPYTQGLMASIP 260
           GP   V   P+HPYT+ LM+++P
Sbjct: 547 GPRAAVFDNPQHPYTKKLMSAVP 569