Pairwise Alignments

Query, 315 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

Subject, 298 a.a., D,D-dipeptide ABC transporter permease from Escherichia coli ECRC62

 Score =  169 bits (427), Expect = 1e-46
 Identities = 103/310 (33%), Positives = 160/310 (51%), Gaps = 20/310 (6%)

Query: 4   LSQTEKPARRSLFSHMRDSDLYWSFSRSKSAKISALVLAILILAAIFAPWIAPQNPYDGA 63
           LS+     R    +    + L W    S      A+++ +++L  IF+PW+A  +P    
Sbjct: 3   LSEETSAVRPQKQTRFNGAKLVWMLKGSPLTVTGAVIIVLMLLMMIFSPWLATHDPN--- 59

Query: 64  SLDMWKAELPPIWQEGGEWPFLLGTDTQGRDMLSAILYGTRISIVIGVASVVLSLVIGMT 123
           ++D+    LPP       W    GTD  GRD+ S +L G++ SI+ G+  V ++ +IG  
Sbjct: 60  AIDLTARLLPP---SAAHW---FGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSL 113

Query: 124 AGLVAGYFGGFADGLLMRIGDITLSIPTILVAILVSTVVRQMLPDSLREVGASAVLILAI 183
            G ++G  GG AD ++MRI DI LSIP++++ + ++  +   L +++          LAI
Sbjct: 114 LGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAM----------LAI 163

Query: 184 ALSAWVQYARTVRAQAIVETGKDYVQAAKLIGVPARRIMAAHILPNTLTPIMVAATLNFG 243
           A+     Y R  R QA+V     YVQAAK  G     ++  HIL N+L P++V A+L+ G
Sbjct: 164 AIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLINWHILRNSLPPLIVQASLDIG 223

Query: 244 MAILTEATLSFLGIGMPPSQPSLGTLIRIGNQFLFSGSWWIVLFPVFQLCLLVVTVNLLG 303
            AIL  ATL F+G+G        G ++  G  ++    WW   FP   + L  V  NL G
Sbjct: 224 SAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLD-QWWYCAFPGAAILLTAVGFNLFG 282

Query: 304 DWLRDALNPK 313
           D +RD L+PK
Sbjct: 283 DGIRDLLDPK 292