Pairwise Alignments

Query, 355 a.a., outer membrane protein from Agrobacterium fabrum C58

Subject, 491 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score =  107 bits (268), Expect = 5e-28
 Identities = 75/219 (34%), Positives = 111/219 (50%), Gaps = 43/219 (19%)

Query: 3   IKSLLIGSAAALAAVSGAKAADAIVAAEPEPMEYVRVCDAFGKGFFYMPGTETCLKFQGY 62
           +KSLL+GSAA L AV+GA+AAD  V A+P  +EYV+VC A+G G+FY+PGT+TC+K  GY
Sbjct: 4   VKSLLLGSAAGLVAVAGAQAADLPVKAKP--VEYVKVCSAYGAGYFYIPGTDTCIKIGGY 61

Query: 63  VRFQT--------------------------DFGRDKAGKSDWDSFTRAQ--FEVDTRTD 94
            RF T                           F        D D  TR +   + D RT 
Sbjct: 62  ARFDTYVNAVGTFNPNISSTTGTAFNGPGVGVFAYPFKDGDDPDYLTRVRGVIDFDARTQ 121

Query: 95  TELGVLRGFI--GFQGNADSGSAAASTTSGSSDKGSAVFVDQAFIELAGLKVGKFTSWWD 152
           T+ G LR ++  G + N+ SG+   +         + ++ ++AFI+ +G   G   S++D
Sbjct: 122 TDYGTLRSYVRFGAEWNSQSGAGVGA--------NNGLYFERAFIQFSGFTFGYTQSFFD 173

Query: 153 DGLGG--ETDELASNSKFNSIRYTYDAGS-FWAGVSVDE 188
            G+G    T    SN     + YT   G+ F A VS+++
Sbjct: 174 PGVGYMLTTPYAGSNRWTTMLAYTAQFGNGFSATVSLED 212



 Score = 25.0 bits (53), Expect = 0.004
 Identities = 67/308 (21%), Positives = 108/308 (35%), Gaps = 76/308 (24%)

Query: 105 GFQGNADSGSAAASTTSGSSDKGSAVFVDQAFIELAGLKVGKFTSWWDDGLGGETDELAS 164
           GF        AA  TT       +A  V        GL    +        G +  ++ +
Sbjct: 203 GFSATVSLEDAANRTTGVQMTGSTATPVFNVTTSATGLTYTNYQG------GQQAPDIVA 256

Query: 165 NSKFNSIRYTYDAGSFWAGVSVDELEGVSVSYNKVNYDKNGNTSNNVGVAAGVGAKFDSV 224
           N     +RY    G+     ++ ++      YN   Y   G TS   G A G  A+F   
Sbjct: 257 N-----LRYDGAWGAVQLSGALHQVVSTLTLYNGF-YPGMGTTSQ-WGWAIGGSAEFKLP 309

Query: 225 SFA------LIGGYDTDRENGAVRLIAEAGVGPGTLGLAG----------VWASGANAYY 268
             A      +  GY    E GAV  I  +G   G     G          ++A+GA  +Y
Sbjct: 310 MLAAGDSLFIQAGY----EQGAVSYIGMSGTAQGQATSVGSIDLKQVGGSLFATGA--FY 363

Query: 269 NVSEW--------AVAASYAIKATDKLKITPGVQ--YYSGY-------GLASWDNFSN-- 309
            V++         ++   +AI+   +   TPG++   Y+GY        + +  +F+   
Sbjct: 364 TVADAVADLFGQPSLTTGWAIQGQFRHYWTPGLRSAIYAGYVSYSVPTNIVAAQDFNMWQ 423

Query: 310 ---NDAWKA------GLTVDYKITDGFSTRLTANYLD-------------VEKKPEVWTG 347
              N  W        G  V Y   DG     T + +D             V    ++W+G
Sbjct: 424 LGFNTIWSPVKNLDIGAEVLYSKVDGSVPLNTYSAIDNNGFGKSKTIQSLVGGSTDIWSG 483

Query: 348 FVRLERSF 355
            VR++R+F
Sbjct: 484 GVRVQRNF 491