Pairwise Alignments

Query, 925 a.a., ABC transporter permease from Agrobacterium fabrum C58

Subject, 909 a.a., Ribosome-associated ATPase from Xanthobacter sp. DMC5

 Score =  970 bits (2508), Expect = 0.0
 Identities = 514/909 (56%), Positives = 643/909 (70%), Gaps = 19/909 (2%)

Query: 19  RLTDVRLAFGSTVALADISVEIPAGRMIGLIGPDGVGKSSLLSLISGARAIQKGNVEVLA 78
           RL+ +R A+G T A+  + + I  G  + L+GPDGVGKS+LL LI+GA+ IQ G VEVL 
Sbjct: 14  RLSGIRHAYGRTQAVDGVDLAIQEGSAVALVGPDGVGKSTLLGLIAGAKRIQTGGVEVLG 73

Query: 79  GDMSDPRHREDTCPRIAYMPQGLGKNLYPTLSVFENIDFFGRLFGQDGRERKARIAELLK 138
            D +  + RE+  PRIA+MPQGLG+NLYP LSV ENI FF RLFG+D   + AR+A LL 
Sbjct: 74  ADFASRKAREEAQPRIAFMPQGLGRNLYPNLSVAENIAFFARLFGEDAATKGARVAPLLA 133

Query: 139 STGLERFADRPAMKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLSRRQFWELIDSI 198
           +TGL+ FADR   KLSGGMKQKLGLCCAL+HDPDLL+LDEPTTGVDPLSRRQFW+ +D+I
Sbjct: 134 ATGLDPFADRLMRKLSGGMKQKLGLCCALVHDPDLLLLDEPTTGVDPLSRRQFWDFVDTI 193

Query: 199 RAGRPGMSVIVATAYMEEAAGFDWLVAMDGGKILATGSPGELLERTSTANLDAAFIALLP 258
           RA RP ++++VATA MEEAA F  +V MD G+ILA GSP E L RT    L+ AFIALLP
Sbjct: 194 RADRPHLTLLVATADMEEAARFGRVVLMDQGRILADGSPAEHLARTGQPTLERAFIALLP 253

Query: 259 EEKRKDYHEVHIAPRRVTHDGDYAIEASHLSMRFGDFTAVDNVSFKIPRGEIFGFLGSNG 318
           E +R D   V +    +  D   AIE+  L+ RFGDF AV++VSF I RGEIFGFLGSNG
Sbjct: 254 EGQRGDGEAV-LPVAAIPADAPVAIESRGLTRRFGDFVAVNDVSFTIRRGEIFGFLGSNG 312

Query: 319 CGKSTTMKMLTGLLAASEGEAKLFGHKVDASDMAIRHRVGYMSQAFSLYSELTVRQNLDL 378
           CGKSTTMKMLTGLL AS GEA LFG  VD  D+  R RVGYMSQAFSLY ELTVRQNL+L
Sbjct: 313 CGKSTTMKMLTGLLPASSGEALLFGVPVDPKDIETRRRVGYMSQAFSLYGELTVRQNLEL 372

Query: 379 HARLFKLPEATIQPRIAEMAERFDLGTVMDTLPDDLPLGIRQRLSLAVAMIHSPDILILD 438
           HARLF LPE     RIA++   FDL   +D L D LPLG+RQRLSLAVA++H P++LILD
Sbjct: 373 HARLFSLPEDAAAKRIADLVATFDLKDHLDALSDGLPLGVRQRLSLAVAVLHEPEVLILD 432

Query: 439 EPTSGVDPVARDGFWQILADLSRNDNVTIFISTHFMNEAERCDRISLMHAGKVLISDTPD 498
           EPTSGVDPVARDGFW  L  LSR++ VTIF+STHFM EAERCDRIS MHAG+V+ + TP 
Sbjct: 433 EPTSGVDPVARDGFWDHLQRLSRDEGVTIFVSTHFMGEAERCDRISFMHAGRVIATGTPQ 492

Query: 499 AITKSRNAETLEEAFVAYLE---DASGVKKAEPAIAPAPATEVVPTQHATPARKRFFDVR 555
           A+ ++++A +LEEAFVAY+E    A+G +   P   P PA            R   F  R
Sbjct: 493 ALKEAQHATSLEEAFVAYMEMGGRAAGTEARLPPPQPRPA-----------GRPSAFSPR 541

Query: 556 RMFSYTRREALELQRDPIRGTLAVLGSVILMFVIGYGINLDVEDLSFAVLDRDDSTISRD 615
           R+ +Y  RE LEL+RDP+R   A+LG+  LM + GYGI LDV+ L FAVLDRD +  SR 
Sbjct: 542 RLAAYAWRETLELKRDPVRLAFALLGTAFLMIIFGYGITLDVDRLRFAVLDRDQTPESRA 601

Query: 616 YVLDIAGSRYFIEKEPIRDYADMDRRMRDGELSLAIEIPPGFGRDVLRGKTVEVGAWIDG 675
           Y+   A S YF  + P+    D+DRR++   ++ AIE+PP FG D+  G+  EV   IDG
Sbjct: 602 YIDGFAHSTYFRIQPPLTSPDDLDRRLKSNAIAFAIELPPSFGADLRSGRQTEVLVTIDG 661

Query: 676 AMPQRAETVRGYVQGMHQTWLARKASEIYGNAATQSSFS-IETRYRYNPDVKSLVAMVPA 734
           AMP RAET++GYV+ +H  +LA  A++  G A   S+F+ +E RYRYN   +SL AMVPA
Sbjct: 662 AMPFRAETIKGYVEAVHTLFLA-DAAQAAGRA--YSAFAGLEMRYRYNQSFRSLDAMVPA 718

Query: 735 VIPLLLMLIPAMLAALSVVREKELGSIVNLYVTPTTRLEFLIGKQLPYVALGMLNFLLLT 794
            I L+L+ IPA+L AL VV EKELGSI NLYVTP T+LEFL+GKQ PYV + + NF+++ 
Sbjct: 719 NIALMLIFIPAILTALGVVTEKELGSITNLYVTPVTKLEFLLGKQAPYVGVALFNFVVMV 778

Query: 795 AFAIFIFQVPFTGSYLAYATGALLFVIIATSIGLVMSSFMKSQIAAIFGTALLTLIPATQ 854
             A+F+F VP  GS+L  A GA  +V+  T+IGLV S+   +Q+AA+FGTA+ T++PATQ
Sbjct: 779 LMALFLFGVPLKGSFLGLALGAFAYVLATTAIGLVSSTLTNTQVAALFGTAIGTMMPATQ 838

Query: 855 YSGMIDPVSSLQGAGAFIGNIYPATYFMTISRGTFSKGLDFAGLSGSFLPLLIAIPLLLI 914
           +SGM+ PV+SL+G G  +G  +P TYFM +S G F+KGL F  L    +      P LL 
Sbjct: 839 FSGMLQPVTSLEGGGWVLGTFFPTTYFMRVSVGAFTKGLSFTELLPFIMATAAFWPALLA 898

Query: 915 AGAALLRKQ 923
               +LRKQ
Sbjct: 899 IAFLILRKQ 907



 Score =  130 bits (328), Expect = 3e-34
 Identities = 90/266 (33%), Positives = 132/266 (49%), Gaps = 18/266 (6%)

Query: 282 AIEASHLSMRFGDFTAVDNVSFKIPRGEIFGFLGSNGCGKSTTMKMLTGLLAASEGEAKL 341
           A+  S +   +G   AVD V   I  G     +G +G GKST + ++ G      G  ++
Sbjct: 12  AVRLSGIRHAYGRTQAVDGVDLAIQEGSAVALVGPDGVGKSTLLGLIAGAKRIQTGGVEV 71

Query: 342 FGHKVDASDMAIRH-------RVGYMSQAF--SLYSELTVRQNLDLHARLFKLPEATIQP 392
            G     +D A R        R+ +M Q    +LY  L+V +N+   ARLF    AT   
Sbjct: 72  LG-----ADFASRKAREEAQPRIAFMPQGLGRNLYPNLSVAENIAFFARLFGEDAATKGA 126

Query: 393 RIAEMAERFDLGTVMDTLPDDLPLGIRQRLSLAVAMIHSPDILILDEPTSGVDPVARDGF 452
           R+A +     L    D L   L  G++Q+L L  A++H PD+L+LDEPT+GVDP++R  F
Sbjct: 127 RVAPLLAATGLDPFADRLMRKLSGGMKQKLGLCCALVHDPDLLLLDEPTTGVDPLSRRQF 186

Query: 453 WQILADLSRND--NVTIFISTHFMNEAERCDRISLMHAGKVLISDTPDAITKSRNAETLE 510
           W  + D  R D  ++T+ ++T  M EA R  R+ LM  G++L   +P          TLE
Sbjct: 187 WDFV-DTIRADRPHLTLLVATADMEEAARFGRVVLMDQGRILADGSPAEHLARTGQPTLE 245

Query: 511 EAFVAYL-EDASGVKKAEPAIAPAPA 535
            AF+A L E   G  +A   +A  PA
Sbjct: 246 RAFIALLPEGQRGDGEAVLPVAAIPA 271