Pairwise Alignments

Query, 354 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

Subject, 291 a.a., putative efflux pump from Pseudomonas putida KT2440

 Score = 62.0 bits (149), Expect = 2e-14
 Identities = 67/277 (24%), Positives = 116/277 (41%), Gaps = 65/277 (23%)

Query: 1   MSKKGLLIG---LAVVVLAIAAYFAWSKLTAEGLPSGFVASNGRIEAVEIDISTKTAGRL 57
           M K  L +G   L ++V+  AA   W  +            +G I A  I I+   +G +
Sbjct: 1   MKKPLLTLGRVVLTLLVVTFAAVLVWQMVVYYMFAPW--TRDGHIRADVIQIAPDVSGLI 58

Query: 58  QDIMVREGDFVKAGQVLAQMDTAQLEAKKRQAEAQLRRAKIAIDTAHSLVAQREAEKTSA 117
           Q + VR+   VK G VL  +D  +     RQA+A L                        
Sbjct: 59  QKVEVRDNQTVKRGDVLFTIDQDRFTLALRQAKATLG----------------------- 95

Query: 118 LAVVEQRKAQLDSASKTYARSRQLLTGNAVSQQIVDDSEATEQSARATLASAQASLAASD 177
                +R+  L  AS+   R+R+L  GN V+ + +++S++ E  AR+ ++ AQ       
Sbjct: 96  -----ERQETLAQASREAQRNRKL--GNLVAAEQLEESQSREARARSAVSEAQV------ 142

Query: 178 AAINAAKAQIIDAEAAVDAAQADIESIETDIVDATLKSPRDGRVQYRIAQPGEVLSAGGR 237
                          AVD AQ +++        + ++SP DG +  R  +  E ++AG  
Sbjct: 143 ---------------AVDTAQLNLDR-------SVVRSPVDGYLNDRAPRNHEFVTAGRP 180

Query: 238 VLNLVDLGDVYMTFFLPTAEAGRTSMGS--DVRLILD 272
           VL++VD    ++  +    + G   +G   D+R++ D
Sbjct: 181 VLSVVDSASYHVDGYFEETKLGGIHIGDAVDIRVMGD 217