Pairwise Alignments

Query, 555 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

Subject, 623 a.a., ATPase components of various ABC-type transport systems, contain duplicated ATPase from Enterobacter asburiae PDN3

 Score =  433 bits (1113), Expect = e-125
 Identities = 260/565 (46%), Positives = 352/565 (62%), Gaps = 33/565 (5%)

Query: 17  ADDRQDNAIIDARNIAVTFKVEHGTVEAVKDISFQLYRGETIAIVGESGSGKSVTARTIM 76
           +++  +  ++    + + F+ E   + AV+++SF L RGET+AIVGESGSGKSVTA  +M
Sbjct: 4   SEELDNREVLAVHQLNIAFQEERQFIPAVQNLSFTLRRGETLAIVGESGSGKSVTALALM 63

Query: 77  GLLTK---RASVSKSATVRFNGD--DILRFSSRQRRALRGNRISMIFQEPMSSLNPIYTI 131
            LL +   + S  K    R N    D+   S  Q + +RG  I+MIFQEPM+SLNP++ +
Sbjct: 64  RLLEQTGGQISSEKMLLRRRNRQVIDLNELSGSQMQGVRGADIAMIFQEPMTSLNPVFPV 123

Query: 132 GSQIVEAIRVHSRLSRKEAEARALDLLRQVQIPEPEARLKQYPHQLSGGQRQRVMIAMAL 191
           G QI E+IR+H  LS  EA   A  +L  V+IPE +A L +YPHQLSGG RQRVMIAMAL
Sbjct: 124 GEQIAESIRLHQGLSGDEALNEARRMLELVRIPEAQAILGRYPHQLSGGMRQRVMIAMAL 183

Query: 192 SNDPDVLIADEPTTALDVTVQAQILNLIRDLQKKRGMAVVLITHDLTIVKQFSDYVYVMQ 251
           S  P VLIADEPTTALDVT+QAQIL LI+ LQ++  M V+ ITHD+ +V   +D V VM 
Sbjct: 184 SCRPAVLIADEPTTALDVTIQAQILQLIKVLQQEMEMGVIFITHDMGVVADIADRVLVMH 243

Query: 252 HGEMREHNTTERLFAAPQHPYTKRLLASEPRGTA---KPLPENSGVL------------- 295
            G   E    E++F AP HPYTK LLA+ PR  A     LP    ++             
Sbjct: 244 KGSAVETGPVEQIFHAPVHPYTKALLAAVPRLGAMNGSDLPRRFPLISLEASEQQEDERE 303

Query: 296 ----------LTASGVRVSFMMRYGGLFKPELKELIAVDSLGLTLKRHETLGLVGESGSG 345
                     L    +   F +R G L + + +E+ AV+++   L   ETL LVGESG G
Sbjct: 304 QDTVVPGKPILEVRDLVTRFPLRSGVLNRVK-REVHAVENVSFDLWPGETLALVGESGCG 362

Query: 346 KTTFGQSLLRLNEPVGGEVIFDGERVDGRSRSEMRPLRSRMQIVFQDPFASLNPRMTIGQ 405
           K+T G++LLRL E   G + F+GER+D    S ++ +R  +Q +FQDP+ASL+PR T+G 
Sbjct: 363 KSTTGRALLRLVESQEGSITFNGERIDTLPDSRLQAVRRDIQFIFQDPYASLDPRHTVGY 422

Query: 406 IIEEGLIINGLGRTKAERLERVRDALEAAGMPGNILSRFPHEFSGGQRQRIAIARAVALE 465
            I E L ++ L   +A +  RV   LE  G+      R+PHEFSGGQRQRI IARA+AL 
Sbjct: 423 SIMEPLRVHNLLDGEAAQ-RRVAWLLERVGLKPEHAWRYPHEFSGGQRQRICIARALALN 481

Query: 466 PEFILLDEPTSALDLSVQAQIIDLLRKLQDERGLSYLFISHDLKVVRALCHRVIVMQGGR 525
           P+ ++ DE  SALD+S++AQII+LL  LQ + G+++LFISHD+ VV  + HRV VM  G+
Sbjct: 482 PKVVIADESVSALDVSIRAQIINLLLDLQRDMGIAFLFISHDMAVVERISHRVAVMFMGQ 541

Query: 526 IVEEGPVEDVLTNPKTEYTQRLVRA 550
           IVE GP   V  NP+  YT++L+ A
Sbjct: 542 IVEIGPRRAVFENPQHPYTRKLIAA 566



 Score =  196 bits (498), Expect = 2e-54
 Identities = 112/289 (38%), Positives = 178/289 (61%), Gaps = 26/289 (8%)

Query: 11  PAIRFDADDRQDNA-----------IIDARNIAVTFKVEHGT-------VEAVKDISFQL 52
           P I  +A ++Q++            I++ R++   F +  G        V AV+++SF L
Sbjct: 288 PLISLEASEQQEDEREQDTVVPGKPILEVRDLVTRFPLRSGVLNRVKREVHAVENVSFDL 347

Query: 53  YRGETIAIVGESGSGKSVTARTIMGLLTKRASVSKSATVRFNGDDILRFSSRQRRALRGN 112
           + GET+A+VGESG GKS T R ++ L+      S+  ++ FNG+ I      + +A+R +
Sbjct: 348 WPGETLALVGESGCGKSTTGRALLRLVE-----SQEGSITFNGERIDTLPDSRLQAVRRD 402

Query: 113 RISMIFQEPMSSLNPIYTIGSQIVEAIRVHSRLSRKEAEARALDLLRQVQIPEPEARLKQ 172
            I  IFQ+P +SL+P +T+G  I+E +RVH+ L  + A+ R   LL +V +    A   +
Sbjct: 403 -IQFIFQDPYASLDPRHTVGYSIMEPLRVHNLLDGEAAQRRVAWLLERVGLKPEHAW--R 459

Query: 173 YPHQLSGGQRQRVMIAMALSNDPDVLIADEPTTALDVTVQAQILNLIRDLQKKRGMAVVL 232
           YPH+ SGGQRQR+ IA AL+ +P V+IADE  +ALDV+++AQI+NL+ DLQ+  G+A + 
Sbjct: 460 YPHEFSGGQRQRICIARALALNPKVVIADESVSALDVSIRAQIINLLLDLQRDMGIAFLF 519

Query: 233 ITHDLTIVKQFSDYVYVMQHGEMREHNTTERLFAAPQHPYTKRLLASEP 281
           I+HD+ +V++ S  V VM  G++ E      +F  PQHPYT++L+A+ P
Sbjct: 520 ISHDMAVVERISHRVAVMFMGQIVEIGPRRAVFENPQHPYTRKLIAAVP 568