Pairwise Alignments

Query, 555 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

Subject, 565 a.a., ABC transporter ATP-binding protein from Dickeya dianthicola ME23

 Score =  447 bits (1150), Expect = e-130
 Identities = 253/557 (45%), Positives = 348/557 (62%), Gaps = 48/557 (8%)

Query: 25  IIDARNIAVTFKVEHGTVEAVKDISFQLYRGETIAIVGESGSGKSVTARTIMGLLTKRAS 84
           +++ +++ VTF       +AV+ +   L  GET+A+VGESG GKS TA +IM L+     
Sbjct: 4   LLEIQDLRVTFPGH----QAVRGLDLALNPGETLALVGESGCGKSATALSIMRLVGAPGQ 59

Query: 85  VSKSATVRFNGDDILRFSSRQRRALRGNRISMIFQEPMSSLNPIYTIGSQIVEAIRVHSR 144
           V+    + FNG D+L   +   R LRGN ISMIFQEPM+SLNP+ TIG QIVE +R H  
Sbjct: 60  VA--GRILFNGQDLLALPNTAMRQLRGNAISMIFQEPMTSLNPVLTIGQQIVETLRTHQP 117

Query: 145 LSRKEAEARALDLLRQVQIPEPEARLKQYPHQLSGGQRQRVMIAMALSNDPDVLIADEPT 204
           L+  +A ARA++LL  V+IPEP  R+  YPHQLSGGQRQRVMIAMA++  P +LIADEPT
Sbjct: 118 LTPAQARARAIELLDLVKIPEPPRRIDDYPHQLSGGQRQRVMIAMAVACQPTLLIADEPT 177

Query: 205 TALDVTVQAQILNLIRDLQKKRGMAVVLITHDLTIVKQFSDYVYVMQHGEMREHNTTERL 264
           TALDVT+QAQIL L+  L+++  M+++LITHDL +V+Q++D V VM  G   E  +TE L
Sbjct: 178 TALDVTIQAQILALLDQLRRELSMSLLLITHDLGVVEQWADRVAVMVGGRKVEEASTEVL 237

Query: 265 FAAPQHPYTKRLLASE---------------------------------PRGTAKPLPEN 291
           F  PQHPYT+ LLA+                                  P  +  P    
Sbjct: 238 FQQPQHPYTRGLLATSLHLAGDLHYRRQRLPEIRHPDNGDAGQVTVVTPPLRSVPPPDTT 297

Query: 292 SGVLLTASGVRVSFMMRYGGLFKPELKELIAVDSLGLTLKRHETLGLVGESGSGKTTFGQ 351
              LL+   V   +    G         + AV  + L +   ETLGLVGESG GK+T  +
Sbjct: 298 RAPLLSLHRVHTRYATPQG--------VVTAVKDISLDIYPGETLGLVGESGCGKSTLSK 349

Query: 352 SLLRLNEPVGGEVIFDGERVDGRSRSEMRPLRSRMQIVFQDPFASLNPRMTIGQIIEEGL 411
           ++LRL     G ++FDG+ +   +  +++PLR R+Q++FQDP+ASLNPR  + +I+E  L
Sbjct: 350 TILRLLPVAAGRMLFDGQDITPLNERQLQPLRRRVQMIFQDPYASLNPRHDVQRILERPL 409

Query: 412 IINGLGRTKAERLERVRDALEAAGMPGNILSRFPHEFSGGQRQRIAIARAVALEPEFILL 471
           I++G+ R +A+R   +  ALE   +P + L R+PHEFSGGQRQRI IARA+ + P  ++ 
Sbjct: 410 IVHGVTR-RAQRQRLISQALERVRLPQSSLQRYPHEFSGGQRQRIGIARALVVNPSLVIC 468

Query: 472 DEPTSALDLSVQAQIIDLLRKLQDERGLSYLFISHDLKVVRALCHRVIVMQGGRIVEEGP 531
           DEP SALD+S+QAQI++LL +L+ E GLS LFISHDL VVR +  RV+VMQ G  VE G 
Sbjct: 469 DEPVSALDVSIQAQILNLLVELKSEMGLSLLFISHDLSVVRYIADRVMVMQHGECVESGD 528

Query: 532 VEDVLTNPKTEYTQRLV 548
            + +   P+  YT+ L+
Sbjct: 529 CQQIWRQPQHPYTRLLL 545



 Score =  200 bits (509), Expect = 1e-55
 Identities = 111/280 (39%), Positives = 168/280 (60%), Gaps = 9/280 (3%)

Query: 3   AAQNNAYAPAIR-FDADDRQDNAIIDARNIAVTFKVEHGTVEAVKDISFQLYRGETIAIV 61
           A Q     P +R     D     ++    +   +    G V AVKDIS  +Y GET+ +V
Sbjct: 278 AGQVTVVTPPLRSVPPPDTTRAPLLSLHRVHTRYATPQGVVTAVKDISLDIYPGETLGLV 337

Query: 62  GESGSGKSVTARTIMGLLTKRASVSKSATVRFNGDDILRFSSRQRRALRGNRISMIFQEP 121
           GESG GKS  ++TI+ LL   A       + F+G DI   + RQ + LR  R+ MIFQ+P
Sbjct: 338 GESGCGKSTLSKTILRLLPVAAG-----RMLFDGQDITPLNERQLQPLR-RRVQMIFQDP 391

Query: 122 MSSLNPIYTIGSQIVEAIRVHSRLSRKEAEARALDLLRQVQIPEPEARLKQYPHQLSGGQ 181
            +SLNP + +   +   + VH    R + +      L +V++P+  + L++YPH+ SGGQ
Sbjct: 392 YASLNPRHDVQRILERPLIVHGVTRRAQRQRLISQALERVRLPQ--SSLQRYPHEFSGGQ 449

Query: 182 RQRVMIAMALSNDPDVLIADEPTTALDVTVQAQILNLIRDLQKKRGMAVVLITHDLTIVK 241
           RQR+ IA AL  +P ++I DEP +ALDV++QAQILNL+ +L+ + G++++ I+HDL++V+
Sbjct: 450 RQRIGIARALVVNPSLVICDEPVSALDVSIQAQILNLLVELKSEMGLSLLFISHDLSVVR 509

Query: 242 QFSDYVYVMQHGEMREHNTTERLFAAPQHPYTKRLLASEP 281
             +D V VMQHGE  E    ++++  PQHPYT+ LL S P
Sbjct: 510 YIADRVMVMQHGECVESGDCQQIWRQPQHPYTRLLLDSVP 549



 Score =  161 bits (407), Expect = 7e-44
 Identities = 100/240 (41%), Positives = 141/240 (58%), Gaps = 7/240 (2%)

Query: 322 AVDSLGLTLKRHETLGLVGESGSGKTTFGQSLLRL---NEPVGGEVIFDGERVDGRSRSE 378
           AV  L L L   ETL LVGESG GK+    S++RL      V G ++F+G+ +     + 
Sbjct: 19  AVRGLDLALNPGETLALVGESGCGKSATALSIMRLVGAPGQVAGRILFNGQDLLALPNTA 78

Query: 379 MRPLRSR-MQIVFQDPFASLNPRMTIGQIIEEGLIINGLGRTKAERLERVRDALEAAGMP 437
           MR LR   + ++FQ+P  SLNP +TIGQ I E L  +    T A+   R  + L+   +P
Sbjct: 79  MRQLRGNAISMIFQEPMTSLNPVLTIGQQIVETLRTHQ-PLTPAQARARAIELLDLVKIP 137

Query: 438 G--NILSRFPHEFSGGQRQRIAIARAVALEPEFILLDEPTSALDLSVQAQIIDLLRKLQD 495
                +  +PH+ SGGQRQR+ IA AVA +P  ++ DEPT+ALD+++QAQI+ LL +L+ 
Sbjct: 138 EPPRRIDDYPHQLSGGQRQRVMIAMAVACQPTLLIADEPTTALDVTIQAQILALLDQLRR 197

Query: 496 ERGLSYLFISHDLKVVRALCHRVIVMQGGRIVEEGPVEDVLTNPKTEYTQRLVRAAFEIA 555
           E  +S L I+HDL VV     RV VM GGR VEE   E +   P+  YT+ L+  +  +A
Sbjct: 198 ELSMSLLLITHDLGVVEQWADRVAVMVGGRKVEEASTEVLFQQPQHPYTRGLLATSLHLA 257