Pairwise Alignments

Query, 555 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

Subject, 555 a.a., ABC transporter, nucleotide binding/ATPase protein (peptide) from Agrobacterium fabrum C58

 Score =  451 bits (1160), Expect = e-131
 Identities = 250/557 (44%), Positives = 350/557 (62%), Gaps = 37/557 (6%)

Query: 25  IIDARNIAVTFKVEHGTVEAVKDISFQLYRGETIAIVGESGSGKSVTARTIMGLLTKRAS 84
           ++  R+++V +    G   AV+++SF +  GE +A+VGESG GKS TA  +  LL   AS
Sbjct: 5   LLGVRDLSVRYHSRSGEAVAVENLSFDIAAGEAVALVGESGCGKSTTALALSNLLPDEAS 64

Query: 85  VSKSATVRFNGDDILRFSSRQRRALRGNRISMIFQEPMSSLNPIYTIGSQIVEAIRVHSR 144
              S  V F+G D+ R   +  R + G RI MIFQEPMS+LNP+YT+G QI E +  H R
Sbjct: 65  --SSGEVTFDGLDLFRLPPKAWRPILGPRIGMIFQEPMSALNPVYTVGDQIAEVLHAHER 122

Query: 145 LSRKEAEARALDLLRQVQIPEPEARLKQYPHQLSGGQRQRVMIAMALSNDPDVLIADEPT 204
           LSRK A +R L+LL  V +PEP  R+  YPH+LSGGQRQR MIA A++  P +LIADEPT
Sbjct: 123 LSRKAARSRVLELLDLVSMPEPHRRIASYPHELSGGQRQRAMIAQAIALTPLLLIADEPT 182

Query: 205 TALDVTVQAQILNLIRDLQKKRGMAVVLITHDLTIVKQFSDYVYVMQHGEMREHNTTERL 264
           TALD T+Q+QIL LI  L++   M ++LI+HDLT+V +++D V VM +G+  E    E L
Sbjct: 183 TALDSTIQSQILELIDRLRRDLSMGLLLISHDLTLVSRWTDRVVVMHNGKRMEELKAEHL 242

Query: 265 FAAPQHPYTKRLLASEPR----------------------GT------AKPLPENSGVLL 296
           F   QHPYTK L+ +  R                      GT      + P+        
Sbjct: 243 FQESQHPYTKGLIGASIRLGDGRHASSERLNEIRTHRNSNGTTSFEIRSPPVAAEPRTNA 302

Query: 297 TASGVR--VSFMMRYGGLFKPELKELIAVDSLGLTLKRHETLGLVGESGSGKTTFGQSLL 354
           TA  +       +RY     P  K   AVD +   L R ETLGLVGESGSGK++  ++L 
Sbjct: 303 TADALLEVEDLTVRY----DPASKTPPAVDRVTFELLRGETLGLVGESGSGKSSLSKALS 358

Query: 355 RLNEPVGGEVIFDGERVDGRSRSEMRPLRSRMQIVFQDPFASLNPRMTIGQIIEEGLIIN 414
           RL    GG+++F+G+ +     +++R  R R+Q++FQDP++SLNPR T+G I++  L  +
Sbjct: 359 RLIPVAGGQILFEGQDITHAGGADLRAFRGRVQMIFQDPYSSLNPRRTVGDILDSVLHAH 418

Query: 415 GLGRTKAERLERVRDALEAAGMPGNILSRFPHEFSGGQRQRIAIARAVALEPEFILLDEP 474
              R  A+R  R+ +AL+   +P + + RFPHEFSGGQRQRIAIARA+ + P  ++ DEP
Sbjct: 419 KY-RNSADRQSRISEALDQVRLPRSAVERFPHEFSGGQRQRIAIARALIVRPSLVICDEP 477

Query: 475 TSALDLSVQAQIIDLLRKLQDERGLSYLFISHDLKVVRALCHRVIVMQGGRIVEEGPVED 534
            SALD+SVQAQI++LL  L++E GLSYLFISHDL VV+ +  R++VM+ G I+E G  ++
Sbjct: 478 VSALDVSVQAQILNLLADLKEEAGLSYLFISHDLAVVKYISDRIMVMKDGHIIERGNHQN 537

Query: 535 VLTNPKTEYTQRLVRAA 551
           + +NP  EYT++L+ AA
Sbjct: 538 LWSNPSHEYTRKLIAAA 554



 Score =  191 bits (484), Expect = 8e-53
 Identities = 100/257 (38%), Positives = 159/257 (61%), Gaps = 8/257 (3%)

Query: 23  NAIIDARNIAVTFKVEHGTVEAVKDISFQLYRGETIAIVGESGSGKSVTARTIMGLLTKR 82
           +A+++  ++ V +     T  AV  ++F+L RGET+ +VGESGSGKS  ++ +  L+   
Sbjct: 305 DALLEVEDLTVRYDPASKTPPAVDRVTFELLRGETLGLVGESGSGKSSLSKALSRLIPVA 364

Query: 83  ASVSKSATVRFNGDDILRFSSRQRRALRGNRISMIFQEPMSSLNPIYTIGSQIVEAIRVH 142
                   + F G DI        RA RG R+ MIFQ+P SSLNP  T+G  +   +  H
Sbjct: 365 GG-----QILFEGQDITHAGGADLRAFRG-RVQMIFQDPYSSLNPRRTVGDILDSVLHAH 418

Query: 143 SRLSRKEAEARALDLLRQVQIPEPEARLKQYPHQLSGGQRQRVMIAMALSNDPDVLIADE 202
              +  + ++R  + L QV++P   + ++++PH+ SGGQRQR+ IA AL   P ++I DE
Sbjct: 419 KYRNSADRQSRISEALDQVRLPR--SAVERFPHEFSGGQRQRIAIARALIVRPSLVICDE 476

Query: 203 PTTALDVTVQAQILNLIRDLQKKRGMAVVLITHDLTIVKQFSDYVYVMQHGEMREHNTTE 262
           P +ALDV+VQAQILNL+ DL+++ G++ + I+HDL +VK  SD + VM+ G + E    +
Sbjct: 477 PVSALDVSVQAQILNLLADLKEEAGLSYLFISHDLAVVKYISDRIMVMKDGHIIERGNHQ 536

Query: 263 RLFAAPQHPYTKRLLAS 279
            L++ P H YT++L+A+
Sbjct: 537 NLWSNPSHEYTRKLIAA 553



 Score =  147 bits (372), Expect = 8e-40
 Identities = 92/242 (38%), Positives = 138/242 (57%), Gaps = 7/242 (2%)

Query: 319 ELIAVDSLGLTLKRHETLGLVGESGSGKTTFGQSLLRL---NEPVGGEVIFDGERVDGRS 375
           E +AV++L   +   E + LVGESG GK+T   +L  L        GEV FDG  +    
Sbjct: 21  EAVAVENLSFDIAAGEAVALVGESGCGKSTTALALSNLLPDEASSSGEVTFDGLDLFRLP 80

Query: 376 RSEMRP-LRSRMQIVFQDPFASLNPRMTIGQIIEEGLIINGLGRTKAERLERVRDALEAA 434
               RP L  R+ ++FQ+P ++LNP  T+G  I E L  +     KA R  RV + L+  
Sbjct: 81  PKAWRPILGPRIGMIFQEPMSALNPVYTVGDQIAEVLHAHERLSRKAAR-SRVLELLDLV 139

Query: 435 GMPG--NILSRFPHEFSGGQRQRIAIARAVALEPEFILLDEPTSALDLSVQAQIIDLLRK 492
            MP     ++ +PHE SGGQRQR  IA+A+AL P  ++ DEPT+ALD ++Q+QI++L+ +
Sbjct: 140 SMPEPHRRIASYPHELSGGQRQRAMIAQAIALTPLLLIADEPTTALDSTIQSQILELIDR 199

Query: 493 LQDERGLSYLFISHDLKVVRALCHRVIVMQGGRIVEEGPVEDVLTNPKTEYTQRLVRAAF 552
           L+ +  +  L ISHDL +V     RV+VM  G+ +EE   E +    +  YT+ L+ A+ 
Sbjct: 200 LRRDLSMGLLLISHDLTLVSRWTDRVVVMHNGKRMEELKAEHLFQESQHPYTKGLIGASI 259

Query: 553 EI 554
            +
Sbjct: 260 RL 261