Pairwise Alignments

Query, 555 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

Subject, 603 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  456 bits (1174), Expect = e-133
 Identities = 257/553 (46%), Positives = 353/553 (63%), Gaps = 30/553 (5%)

Query: 25  IIDARNIAVTFKVEHGTVEAVKDISFQLYRGETIAIVGESGSGKSVTARTIMGLLTKRAS 84
           ++  RN+  +F V+      V+D+SF +  GET+AIVGESGSGKSVT+ ++M LL   AS
Sbjct: 6   VLSVRNLTTSFLVDGEWKSVVRDVSFDVKSGETVAIVGESGSGKSVTSLSLMRLLAP-AS 64

Query: 85  VSKSATVRFNGDDILRFSSRQRRALRGNRISMIFQEPMSSLNPIYTIGSQIVEAIRVHSR 144
                 V  NG ++L  S R+ R +RGN ISMIFQEPM+SLNPI+TIG QI E +  H  
Sbjct: 65  SHIEGEVLLNGRNLLTLSEREMRGVRGNDISMIFQEPMTSLNPIFTIGRQISEVLIRHKG 124

Query: 145 LSRKEAEARALDLLRQVQIPEPEARLKQYPHQLSGGQRQRVMIAMALSNDPDVLIADEPT 204
           LS++EA A  + LL +V+IP   +R  +YPHQ SGG RQRVMIAMAL++ P +LIADEPT
Sbjct: 125 LSKQEARAETVRLLEKVRIPNAASRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPT 184

Query: 205 TALDVTVQAQILNLIRDLQKKRGMAVVLITHDLTIVKQFSDYVYVMQHGEMREHNTTERL 264
           TALDVT+Q QIL+LI+ LQ++ GM+V+ ITHD+ +V + +D   VM  G+  E   TE +
Sbjct: 185 TALDVTIQGQILDLIKLLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGDAVETGATEDI 244

Query: 265 FAAPQHPYTKRL---------------------------LASEPRGTAKPLPENSGVLLT 297
           F   QHPYT+ L                           L++EP+  A+ +      +L+
Sbjct: 245 FRRGQHPYTRALLSAVPKLGSMHDRQWPTRFPVLDLKTGLSTEPQEVAETVACGQTPVLS 304

Query: 298 ASGVRVSFMMRYGGLFKPELKELIAVDSLGLTLKRHETLGLVGESGSGKTTFGQSLLRLN 357
              +   F +R  GL+  +   + AV+++   L + ETL LVGESG GK+T G+S++RL 
Sbjct: 305 VKNLVTRFPIR-SGLWARQTGAVHAVENVSFDLFQGETLSLVGESGCGKSTTGRSIMRLV 363

Query: 358 EPVGGEVIFDGERVDGRSRSEMRPLRSRMQIVFQDPFASLNPRMTIGQIIEEGLIINGLG 417
           EP  G+V  DG  V       +R +R  +Q++FQDPF+SLNPRMT+G  I E  I + LG
Sbjct: 364 EPSSGDVSLDGYDVMRLDTVGLRNMRKSVQMIFQDPFSSLNPRMTVGTAISEPFIKHRLG 423

Query: 418 RTKAERLERVRDALEAAGMPGNILSRFPHEFSGGQRQRIAIARAVALEPEFILLDEPTSA 477
            TK  + E+  D LE  G+  ++ +R+PHEFSGGQRQRIAIARA+AL+P+ I+ DE  SA
Sbjct: 424 STKQAK-EKTADLLEKVGLSADMANRYPHEFSGGQRQRIAIARALALDPKVIVADESVSA 482

Query: 478 LDLSVQAQIIDLLRKLQDERGLSYLFISHDLKVVRALCHRVIVMQGGRIVEEGPVEDVLT 537
           LD+S++AQ+ +LL  LQ    L++LFISHD+ VV  + HRV VM  G IVE GP   V  
Sbjct: 483 LDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAAVFD 542

Query: 538 NPKTEYTQRLVRA 550
           NP+  YT++L+ A
Sbjct: 543 NPQHPYTKKLMAA 555



 Score =  197 bits (501), Expect = 1e-54
 Identities = 109/264 (41%), Positives = 165/264 (62%), Gaps = 15/264 (5%)

Query: 25  IIDARNIAVTFKV-------EHGTVEAVKDISFQLYRGETIAIVGESGSGKSVTARTIMG 77
           ++  +N+   F +       + G V AV+++SF L++GET+++VGESG GKS T R+IM 
Sbjct: 302 VLSVKNLVTRFPIRSGLWARQTGAVHAVENVSFDLFQGETLSLVGESGCGKSTTGRSIMR 361

Query: 78  LLTKRASVSKSATVRFNGDDILRFSSRQRRALRGNRISMIFQEPMSSLNPIYTIGSQIVE 137
           L+        S  V  +G D++R  +   R +R + + MIFQ+P SSLNP  T+G+ I E
Sbjct: 362 LVEP-----SSGDVSLDGYDVMRLDTVGLRNMRKS-VQMIFQDPFSSLNPRMTVGTAISE 415

Query: 138 AIRVHSRLSRKEAEARALDLLRQVQIPEPEARLKQYPHQLSGGQRQRVMIAMALSNDPDV 197
               H   S K+A+ +  DLL +V +    A   +YPH+ SGGQRQR+ IA AL+ DP V
Sbjct: 416 PFIKHRLGSTKQAKEKTADLLEKVGLSADMAN--RYPHEFSGGQRQRIAIARALALDPKV 473

Query: 198 LIADEPTTALDVTVQAQILNLIRDLQKKRGMAVVLITHDLTIVKQFSDYVYVMQHGEMRE 257
           ++ADE  +ALDV+++AQ+ NL+ DLQ+   +A + I+HD+ +V++ S  V VM  GE+ E
Sbjct: 474 IVADESVSALDVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVE 533

Query: 258 HNTTERLFAAPQHPYTKRLLASEP 281
                 +F  PQHPYTK+L+A+ P
Sbjct: 534 IGPRAAVFDNPQHPYTKKLMAAVP 557