Pairwise Alignments

Query, 555 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

Subject, 568 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

 Score =  470 bits (1209), Expect = e-137
 Identities = 258/545 (47%), Positives = 354/545 (64%), Gaps = 32/545 (5%)

Query: 25  IIDARNIAVTFKVEHGTVEAVKDISFQLYRGETIAIVGESGSGKSVTARTIMGLLTKRAS 84
           +++ RN+   F +  G   AV DISF +  G+T+ +VGESGSGKSVTAR+I+ ++     
Sbjct: 7   LLEVRNLVTEFPLRTGVFRAVNDISFSIEPGKTLCVVGESGSGKSVTARSILQIIDSPGY 66

Query: 85  VSKSATVRFNGD----DILRFSSRQR--RALRGNRISMIFQEPMSSLNPIYTIGSQIVEA 138
           ++  + +    D    D+ +   R R  RA+RG  I+MIFQEPMSSL+P++T+G QI E 
Sbjct: 67  ITSGSIILNKADGSSVDLAKLDPRGRAIRAVRGADIAMIFQEPMSSLSPVHTVGDQITEV 126

Query: 139 IRVHSRLSRKEAEARALDLLRQVQIPEPEARLKQYPHQLSGGQRQRVMIAMALSNDPDVL 198
           +R+H ++S+ +A A A++LLRQV+IP PE  L +Y  Q SGG RQR MIAMAL+  P +L
Sbjct: 127 LRLHLKMSKAQARAEAIELLRQVEIPNPEKALDRYAFQYSGGMRQRAMIAMALACKPQLL 186

Query: 199 IADEPTTALDVTVQAQILNLIRDLQKKRGMAVVLITHDLTIVKQFSDYVYVMQHGEMREH 258
           IADEPTTALDVT QA+IL+LI  LQK  GMAV+ ITHD+ +V Q +D V VM HG ++E+
Sbjct: 187 IADEPTTALDVTTQAEILDLISRLQKAHGMAVLFITHDMGVVAQIADDVLVMHHGVVKEY 246

Query: 259 NTTERLFAAPQHPYTKRLLAS--------EPRGTAKPLPENSGVLLTASGVRVSFMMRYG 310
            T E++F  PQ PYT+ L+ S        E R    PL + +  +L    + + F     
Sbjct: 247 GTVEQIFHKPQDPYTRMLIGSVLKLEQKAEIRLARPPLDQTAAPILEVKDLSMHF----- 301

Query: 311 GLFKPELKELIAVDSLGLTLKRHETLGLVGESGSGKTTFGQSLLRLNEPVGGEVIF---D 367
                   E+ A+D + + L   ETLG+VGESGSGKTT G+S++RL +P  GE+++   D
Sbjct: 302 -------GEMKALDGVSIKLLPGETLGIVGESGSGKTTMGRSIMRLYDPTAGEMLYRRAD 354

Query: 368 GERVD--GRSRSEMRPLRSRMQIVFQDPFASLNPRMTIGQIIEEGLIINGLGRTKAERLE 425
           G  VD       E++  R  +++VFQDPF SLNPRMT+ Q+I E L++NG+ + K E  E
Sbjct: 355 GSVVDLSKIEGKELKAARRELRMVFQDPFGSLNPRMTVAQVIGEPLLVNGIAKGK-ELEE 413

Query: 426 RVRDALEAAGMPGNILSRFPHEFSGGQRQRIAIARAVALEPEFILLDEPTSALDLSVQAQ 485
           RV   +E  G+  +   R+PH FSGGQRQRI IARA+ L P  I+ DE TSALD+SV+ Q
Sbjct: 414 RVCSLMEQVGLDPSGRERYPHAFSGGQRQRIGIARAITLRPRIIVADEATSALDVSVRFQ 473

Query: 486 IIDLLRKLQDERGLSYLFISHDLKVVRALCHRVIVMQGGRIVEEGPVEDVLTNPKTEYTQ 545
           ++DLL KLQDE GL+Y+FISHD+ V+R +C RV VM  G++VE G  E V   P   YTQ
Sbjct: 474 VLDLLMKLQDELGLAYIFISHDIGVIRYMCDRVGVMYRGKLVEVGEAEKVCNAPDHPYTQ 533

Query: 546 RLVRA 550
            L+ A
Sbjct: 534 ALLSA 538



 Score =  172 bits (437), Expect = 2e-47
 Identities = 98/264 (37%), Positives = 158/264 (59%), Gaps = 7/264 (2%)

Query: 19  DRQDNAIIDARNIAVTFKVEHGTVEAVKDISFQLYRGETIAIVGESGSGKSVTARTIMGL 78
           D+    I++ +++++ F    G ++A+  +S +L  GET+ IVGESGSGK+   R+IM L
Sbjct: 285 DQTAAPILEVKDLSMHF----GEMKALDGVSIKLLPGETLGIVGESGSGKTTMGRSIMRL 340

Query: 79  LTKRASVSKSATVRFNGDDILRFSSRQRRALRGNRISMIFQEPMSSLNPIYTIGSQIVEA 138
               A          +  D+ +   ++ +A R   + M+FQ+P  SLNP  T+   I E 
Sbjct: 341 YDPTAGEMLYRRADGSVVDLSKIEGKELKAAR-RELRMVFQDPFGSLNPRMTVAQVIGEP 399

Query: 139 IRVHSRLSRKEAEARALDLLRQVQIPEPEARLKQYPHQLSGGQRQRVMIAMALSNDPDVL 198
           + V+     KE E R   L+ QV + +P  R ++YPH  SGGQRQR+ IA A++  P ++
Sbjct: 400 LLVNGIAKGKELEERVCSLMEQVGL-DPSGR-ERYPHAFSGGQRQRIGIARAITLRPRII 457

Query: 199 IADEPTTALDVTVQAQILNLIRDLQKKRGMAVVLITHDLTIVKQFSDYVYVMQHGEMREH 258
           +ADE T+ALDV+V+ Q+L+L+  LQ + G+A + I+HD+ +++   D V VM  G++ E 
Sbjct: 458 VADEATSALDVSVRFQVLDLLMKLQDELGLAYIFISHDIGVIRYMCDRVGVMYRGKLVEV 517

Query: 259 NTTERLFAAPQHPYTKRLLASEPR 282
              E++  AP HPYT+ LL++ PR
Sbjct: 518 GEAEKVCNAPDHPYTQALLSAIPR 541



 Score =  143 bits (360), Expect = 2e-38
 Identities = 84/248 (33%), Positives = 144/248 (58%), Gaps = 17/248 (6%)

Query: 322 AVDSLGLTLKRHETLGLVGESGSGKTTFGQSLLRLNEPVG----GEVIF--------DGE 369
           AV+ +  +++  +TL +VGESGSGK+   +S+L++ +  G    G +I         D  
Sbjct: 26  AVNDISFSIEPGKTLCVVGESGSGKSVTARSILQIIDSPGYITSGSIILNKADGSSVDLA 85

Query: 370 RVDGRSRSEMRPLRSRMQIVFQDPFASLNPRMTIGQIIEEGLIIN---GLGRTKAERLER 426
           ++D R R+      + + ++FQ+P +SL+P  T+G  I E L ++      + +AE +E 
Sbjct: 86  KLDPRGRAIRAVRGADIAMIFQEPMSSLSPVHTVGDQITEVLRLHLKMSKAQARAEAIEL 145

Query: 427 VRDALEAAGMPGNILSRFPHEFSGGQRQRIAIARAVALEPEFILLDEPTSALDLSVQAQI 486
           +R        P   L R+  ++SGG RQR  IA A+A +P+ ++ DEPT+ALD++ QA+I
Sbjct: 146 LRQV--EIPNPEKALDRYAFQYSGGMRQRAMIAMALACKPQLLIADEPTTALDVTTQAEI 203

Query: 487 IDLLRKLQDERGLSYLFISHDLKVVRALCHRVIVMQGGRIVEEGPVEDVLTNPKTEYTQR 546
           +DL+ +LQ   G++ LFI+HD+ VV  +   V+VM  G + E G VE +   P+  YT+ 
Sbjct: 204 LDLISRLQKAHGMAVLFITHDMGVVAQIADDVLVMHHGVVKEYGTVEQIFHKPQDPYTRM 263

Query: 547 LVRAAFEI 554
           L+ +  ++
Sbjct: 264 LIGSVLKL 271