Pairwise Alignments

Query, 378 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

Subject, 391 a.a., ABC transporter, membrane spanning protein (oligopeptide) from Agrobacterium fabrum C58

 Score =  252 bits (643), Expect = 1e-71
 Identities = 144/364 (39%), Positives = 205/364 (56%), Gaps = 24/364 (6%)

Query: 26  SYLALVWRRLRRSVTGMLGLVLVALLILIAIFADFFAPMNPLETNAS--FSPPQVVRFTD 83
           S L L+W + R+    +     +AL+ L  + ++F AP N    N    ++PPQ +   D
Sbjct: 40  SQLKLMWWQFRQHKIAVWSGAFLALIYLSILISEFLAPYNLHTRNIEHIYAPPQAIHLFD 99

Query: 84  KDGNFSPFPRVYATADTAELD---------PVTFQPIVGPDYDNPVYLGFFVKGSEYRLL 134
            DG F   P VY    T ++D         P   QP           L FF KG  YR  
Sbjct: 100 -DGKFVG-PFVYGREMTLDMDNLRRVYRDVPTDIQP-----------LRFFCKGDTYRFW 146

Query: 135 GLIPMSRHFFGSTDGKPVHFLGTDKFGRDVLSRAIYGSRISLAIALSVVAIVTVIGTSVG 194
           G+     HF    +G  +  LGTD+ GRDVLSR IYG+RISL I L  VA+  V+G  +G
Sbjct: 147 GMFEGRTHFVCPAEGGEMFLLGTDRLGRDVLSRIIYGARISLTIGLLGVAMSFVLGIVIG 206

Query: 195 LISGYFGGPLDAWLQRFVEVVLAFPQLPLYLALTSLIPVTAPTTVFLLFVVGVMSALGWA 254
            ++GY GG  D  +QR +EV+ + P +PL+LAL +++PVT    +  L +  ++  L W 
Sbjct: 207 GLAGYRGGTFDLIVQRIIEVLQSIPSIPLWLALAAIMPVTWSPILVYLGITIILGMLDWT 266

Query: 255 QMSREVRGKTLALARIDYVRAAIAVGATDRRIIFQHILPNVMSHVIVAVTLHIPSVVLLE 314
            ++R VR K LAL   DYV +A  +GA   RII +H++P  MSH+I + TL IP ++L E
Sbjct: 267 GLARAVRSKLLALREEDYVLSAQLMGAGTPRIIGRHLIPGFMSHLIASATLTIPGMILGE 326

Query: 315 SFLGFLGFAVKPPLISWGLMLQDTATYSVIGSYPWILAPVGFVLVTVFAFNALGDGLRDA 374
           + L FLG  ++PP+ SWG++L +  + SVI  YPW+L P   V++ + AFN  GDGLRDA
Sbjct: 327 TALSFLGLGLRPPITSWGILLTEARSVSVIALYPWLLIPTIPVVLVILAFNFFGDGLRDA 386

Query: 375 VDPY 378
            DP+
Sbjct: 387 ADPF 390