Pairwise Alignments

Query, 335 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

Subject, 332 a.a., ABC transporter, membrane spanning protein (oligopeptide) from Agrobacterium fabrum C58

 Score =  239 bits (610), Expect = 7e-68
 Identities = 129/331 (38%), Positives = 200/331 (60%), Gaps = 7/331 (2%)

Query: 1   MLRFLTIRVASAIPVLLILSVVTFAIIQAPPGDYADYIRSQLMNQGGASFEQAE-AQAQA 59
           MLR++  R+   IP L+++S++ F II+ PPGDY +   ++L   G    E A  A+ + 
Sbjct: 1   MLRYIIKRILVMIPTLILISMLVFTIIELPPGDYFESYVAELRAMG----ETANLAEIEE 56

Query: 60  YRIEHGLDKPLVIQYFNWIGGIITRGDFGYSFYYNKPVADVVGERLPRTIALALVCHIFA 119
            R  +G D+P  I+YF W  G++  GDFGYSF Y  PV+DVVG+RL  T+ ++ V  I  
Sbjct: 57  LRTRYGFDQPAPIRYFRWATGMLV-GDFGYSFEYQLPVSDVVGDRLWLTVLVSFVTIIVT 115

Query: 120 SVLGIAFGIWAATRQYSWVDNLLSTIAFLGMTIPRFLMALILVYLMVFHFDVSEIGSFFS 179
            +L    GI++AT +YSW D  L+ +  LG+ IP F++ALIL+Y     F +S IG    
Sbjct: 116 WILAFPIGIYSATHKYSWGDYGLTFLGLLGIAIPNFMLALILMYFANIWFGIS-IGHLMD 174

Query: 180 PQYGGAPWSWGKFVDLVSHVWPVVAIAVFGGLAYNMRVMRGNLLDTLNAQYVETARAKGL 239
            +Y     SW KF  ++ H+W  V I    G A  +R +R NLLD L  QYV TARAKGL
Sbjct: 175 REYLNQAMSWAKFKSILEHIWIPVLIIGTAGTAGMIRRLRANLLDELQKQYVVTARAKGL 234

Query: 240 SEGAVIMRHAVPNAVHPLVMYQGVVLPYMLSGEIETAIIFALPTVGPAIVGSMAVGDVYV 299
               V++++ +  A++  +   G +LP ++SG   TA++ +L T GP ++ ++   D+Y+
Sbjct: 235 HPFKVLIKYPLRMALNFFISDIGSILPAIISGAEITAVVLSLETTGPMLIRALQSQDMYL 294

Query: 300 TATFMMVLAATLIVGNIIADMLLAMLDPRVR 330
             +F+M LA   ++G +++D+ LA+LDPR+R
Sbjct: 295 AGSFLMFLAFLTVIGVLVSDIALAILDPRIR 325