Pairwise Alignments

Query, 695 a.a., alpha-galactoside ABC transporter substrate-binding protein from Agrobacterium fabrum C58

Subject, 633 a.a., ABC transporter, substrate binding protein (oligopeptide) from Agrobacterium fabrum C58

 Score =  114 bits (286), Expect = 1e-29
 Identities = 150/633 (23%), Positives = 251/633 (39%), Gaps = 88/633 (13%)

Query: 57  ALPSYSEPDWITEKFEKAGKLPPLKERLPEEPLVYKTGNMPDGVGVYGDTMRHVVGGRPE 116
           A  +Y +P +  +K EK G+LP + ERLP+ P V     +    G +G ++R ++GG+  
Sbjct: 20  ARAAYVDPAYFKDKREK-GELPDVAERLPKNPRVIDMKALGREPGKHGGSVRMLIGGQR- 77

Query: 117 GWNYIAGQSQGWGGIDIALSECLTRTAPLFQVDAKDTEPLPNLAKSWEWSEDGHTLTMHL 176
                          DI L   ++  A L   D K  E  P++ +S+E  E+    T  L
Sbjct: 78  ---------------DIRLMP-ISNYARLVGYDEK-FELHPDILESYEVQEE-RIFTFKL 119

Query: 177 VKGAKWSDGEAFNADDVMFYWEDAVVDPNVSPLGGGASPEAFGEGTTLKKIDDYTVEWTF 236
            +G KWSDG  F ++D  ++WED  ++  +   G             ++ +D  TV +T+
Sbjct: 120 REGHKWSDGSDFTSEDFRYFWEDVALNKEIHKGGPPIELLVNNNPPLIEVVDRLTVRYTW 179

Query: 237 KAAFPKQYLYTMAY--PSFCPGPSHILKPQHPKYS-----------------KNTYNQFK 277
           +   P  +L  +A   P+    P+  +K  H KY                     + +  
Sbjct: 180 EGPNP-DFLAKLAAASPARLFLPAAYMKQFHVKYQTAENLAKLIKKNKADDWSGLHIKMS 238

Query: 278 NAFPPEYMNMPVMGAWVPVSYRPDDLIVLRRNPYYWKVDEKGQQLPYLNEVHYKLSTWAD 337
               PE   +P + AW   +  P +  V  RNPYY +VDE G QLPYL+   + L+  + 
Sbjct: 239 RQVRPENPALPTLDAWRNTTSPPAEQFVFERNPYYHRVDENGLQLPYLD--RFLLNVTSS 296

Query: 338 RDVQAVAGSGDFSNLEQPENFV-ASLKRAADPNAPARLAFGPRLIGYNL----QMNFSAN 392
             + A   SGD        +F   +  + A+   P ++    R  G  +     +N +  
Sbjct: 297 DIISAKTASGDSDLQYFGLDFADYTFLKDAEKRFPLKVNLYKRSQGSRIALLPNLNCADP 356

Query: 393 GWGNPDERGQAIREL----NRNEVFRQAVTSALDRKAIGDSLVKGPFTAIYPGGISSGTS 448
            W    +  +  R L    NR+E+        L +++    L + P   +Y    +   S
Sbjct: 357 VWRTAFQDVRVRRALSLAINRHEI-NMVCFYGLAKESADTVLPESP---LYRQEFADAWS 412

Query: 449 FYDRASTVYYPFNLEGAKAALASIGLKDTDGDGFLNFPKETLGGRNVEITLLVNNGYATD 508
            +DRA+          A   L   G    D  G    P     GR   I +        +
Sbjct: 413 AFDRAA----------ANRLLDEAGFDKRDNAGLRLLP----DGRPAYIIVETTGESTLE 458

Query: 509 KSLAEGLVGQMAKLGLRVVIHSLDSNQRDAAHYGGQF---DWLVRRNSTELSSVVQNTEQ 565
             + E +      +G+ V +     +       GG+     W+   N      ++ +   
Sbjct: 459 TDVMELVTDHWRHIGIAVSVRPTQRDVFRKRAMGGEVLMSVWMGMDNGVPTPDMLPS--G 516

Query: 566 LAPVG-PRTSWN-------HRSPEGKELDLMPFEKEMADIVRKFISSQDNAERADLMKQY 617
           LAP G  +  W            EGKE DL P    + ++++K+  S    ER  +  + 
Sbjct: 517 LAPTGDDQLQWPVWGIHYLSGGREGKEPDL-PEAAHLLNLLKKWRRSVTEEEREAIWLEM 575

Query: 618 QKVYTQNLYTIGLTEYPGAL---IVNKRFSNVP 647
             +YTQ +++IG+    GAL   +  KR  NVP
Sbjct: 576 LGIYTQQVFSIGIVN--GALQPVVHVKRMRNVP 606