Pairwise Alignments

Query, 385 a.a., nolF secretion protein from Agrobacterium fabrum C58

Subject, 366 a.a., RND transporter from Pseudomonas simiae WCS417

 Score = 89.0 bits (219), Expect = 2e-22
 Identities = 76/301 (25%), Positives = 132/301 (43%), Gaps = 9/301 (2%)

Query: 51  AGIPFELAAQEIA----TIGTRPMAERL-SISGELQPVNRVLIRAREAGKILEMNVREGQ 105
           AG   E AAQ        +  +P ++ + S  GE++      +  R  GK+ +  V EG+
Sbjct: 19  AGCGHEEAAQTTIRPAMVVQPQPSSQSMDSYPGEVRARYEPDLAFRIGGKVSKRLVEEGE 78

Query: 106 AVRAGDMLVRFETDELQSTLLLRQSDRDAAEAELMLAMQALARTEQLAAKNIASTEQLDK 165
            V+A   L   +  +++  L   ++    AEA L L      R + L  + + S  Q D 
Sbjct: 79  RVKANQALAELDPQDVRLQLEATRAQVAGAEANLSLVRAERDRYKTLMDRQMVSRSQYDN 138

Query: 166 AKSDVVVKTTRVQSLSSQVDIARLALRNAEIRAPFDGTVTRRVAETGARIGADGELLTLV 225
           +++       R++ + ++ D+A      A +RAP DG V +RV E G  + A   + TL 
Sbjct: 139 SENLYRAGVARLKQIKAEFDVASNQAGYAVLRAPQDGVVAKRVVEVGQVVSAGQTVFTLA 198

Query: 226 DTSELEAKVLVATRDIPRVARGQTAELEIDGLAGQIVKGTVERISPVAEDGTRVVAVYLR 285
              E E  + +  +   R   GQ   +E+     Q   G +  +SP A+  +R  A   R
Sbjct: 199 TDGEREVLISLPEQGFGRFKIGQPVSVELWSQPDQRFTGRIRELSPAADPKSRTFAA--R 256

Query: 286 LANRDGQLWGGMFAGGSILLREKND-ALVVPAIALRKDETGYHVLKIQ-DGHLRRQTVAV 343
           +A   G++   +     + ++   D  L VP  AL  +    +V ++Q D  L+R  V +
Sbjct: 257 VAFTGGKVPAELGQSARVFIQVDGDIPLSVPLSALSAENGASYVWRVQPDNTLKRTPVRI 316

Query: 344 G 344
           G
Sbjct: 317 G 317