Pairwise Alignments

Query, 385 a.a., nolF secretion protein from Agrobacterium fabrum C58

Subject, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

 Score =  116 bits (290), Expect = 1e-30
 Identities = 109/379 (28%), Positives = 160/379 (42%), Gaps = 39/379 (10%)

Query: 7   KRTIKAGA-ALAGCVLVVTALDPARGSVDAKERVKGIVAAAAMSPAGIPFELAAQEIATI 65
           KRT+ A A A+AG +    AL                V + +  PA   +      +AT 
Sbjct: 3   KRTLLAWAGAVAGALAAAYAL----------------VGSGSAPPAAAVWPATKVALATA 46

Query: 66  GTRPMAERLSISGELQPVNRVLIRAREAGKILEMNVREGQAVRAGDMLVRFETDELQSTL 125
               +A +   SGEL+ VN+V + A   G+I  +    GQ V AG +LV+      Q+  
Sbjct: 47  EQVQLARQRFASGELEAVNQVQVAAEMPGRITRIAFESGQTVAAGQLLVQLNDAPEQAL- 105

Query: 126 LLRQSDRDAAEAELMLAMQALARTEQLAAKNIASTEQLDKAKSDVVVKTTRVQSLSSQVD 185
                 R   +A L  A   L R+ +L A N  S E LD A + V V    +Q + + + 
Sbjct: 106 ------RVQLQARLRNADVVLQRSRKLRAMNAVSQELLDNAATAVDVARGELQHVEALI- 158

Query: 186 IARLALRNAEIRAPFDGTVTRRVAETGARIGADGELLTLVDTSELEAKVLVATRDIPRVA 245
                     IRAPF G +  R    G  + A   +++L D S+L     +  +  P V 
Sbjct: 159 ------AQKAIRAPFAGKLGIRRVHQGQYLAAGETIVSLADISQLHVNFALGEQAAPEVH 212

Query: 246 RGQTAELEIDGLAGQIVKGTVERISPVAEDGTRVVAVYLRLANRDGQLWGGMFAGGSILL 305
            GQ   L +D + GQ  +  V  + PV     R+V V   L N  GQL  GM+AG  +  
Sbjct: 213 AGQVLALTVDAVRGQDFQARVVAVDPVVST-ARLVQVQAALPNPQGQLQPGMYAGVRLDA 271

Query: 306 REKNDALVVPAIALRKDETGYHV-LKIQD----GHLRRQTVAVGPRWNGGSLIEIGAGLA 360
            + +  L VP  A+     G  V +  QD      + R  V  G RW G   +EI +GL 
Sbjct: 272 AQPSTVLAVPETAITYTAYGQTVFVATQDPQHGTRVSRVQVTTGERWQG--RVEITSGLT 329

Query: 361 DGETILTVPLPELRPDMAV 379
            G+ ++     +L   M V
Sbjct: 330 PGDRVVVSGQLKLSDGMPV 348