Pairwise Alignments

Query, 385 a.a., nolF secretion protein from Agrobacterium fabrum C58

Subject, 406 a.a., RND efflux membrane fusion protein-related protein from Pseudomonas putida KT2440

 Score =  112 bits (281), Expect = 1e-29
 Identities = 116/383 (30%), Positives = 169/383 (44%), Gaps = 43/383 (11%)

Query: 16  LAGCVLVVTALDPARGSVDAKERVKGIVAAAAMSPAGIPFELAAQEIATIGTRPMAERLS 75
           LA  +L+V AL    G   A    + I    A  P   P  +AA   A    RP  ERL 
Sbjct: 31  LAVVLLIVLAL----GGYKAFSIYQQIQMFTAPKP---PITVAA---AMAEQRPWQERLP 80

Query: 76  ISGELQPVNRVLIRAREAGKILEMNVREGQAVRAGDMLVRFETDELQSTLLLRQSDRDAA 135
             G L+ +  V +     G +  ++   GQ V+AG +L++   D  Q T LL       A
Sbjct: 81  AVGSLKALQGVDLSLEVEGIVKSLHFDSGQQVKAGQLLLQLNDD--QETALL-----GTA 133

Query: 136 EAELMLAMQALARTEQLAAKNIASTEQLDKAKSDVVVKTTRVQSLSSQVDIARLALRNAE 195
            A+L LA     R  QL   +  S  + D+  S       R Q++  Q+   ++  R   
Sbjct: 134 LADLGLAKVDFGRGSQLVGDSAISRGEFDRLSSQY----RRNQAVVEQLKAQKIKKR--- 186

Query: 196 IRAPFDGTVTRRVAETGARIGADGELLTLVDTSELEAKVLVATRDIPRVARGQTAELEID 255
           I APF GT+  R  + G  + A   + TL DTS L     V  + +P ++ GQ   +++ 
Sbjct: 187 INAPFSGTIGIRQVDIGQYLAAGTVIATLQDTSSLYVDFNVPEQALPHLSLGQQVLVQVA 246

Query: 256 GLAGQIVKGTVERISPVAEDGTRVVAVYLRLANRDGQLWGGMFAGGSILLREKNDALVVP 315
              GQ   G++  I+P  E+ TR + V   +AN DG+L  GMFA   ILL      +VVP
Sbjct: 247 AYPGQRFPGSLSAINPKVEETTRNLLVRATMANPDGKLLPGMFASLLILLPNPQPQVVVP 306

Query: 316 AIAL--------------RKDETGYHVL--KIQDGHLRRQ-TVAVGPRWNGGSLIEIGAG 358
             A+              RKD+ G  V   K Q   +  Q TV  G R +G  ++ +  G
Sbjct: 307 ESAITYTLYGNSVYVASPRKDKDGKPVYDDKGQPQLVAEQRTVKTGERRDG--VVVVSEG 364

Query: 359 LADGETILTVPLPELRPDMAVTI 381
           L  GE ++T    +L P  A+ I
Sbjct: 365 LQAGEQVVTAGQLKLTPGAAIRI 387