Pairwise Alignments

Query, 1048 a.a., AcrB/AcrD/AcrF family protein from Agrobacterium fabrum C58

Subject, 1035 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

 Score =  473 bits (1216), Expect = e-137
 Identities = 309/1033 (29%), Positives = 533/1033 (51%), Gaps = 33/1033 (3%)

Query: 8    VNHPVFATMMMVALLVMGAFSLQRLGLDQYPNVDVPVVVVVTSYPGATPETVEMEVTRPV 67
            +  PV   ++ +A++++G  S   L +   P +D PV+VV  +  GA+PE +   V  P+
Sbjct: 8    IRRPVATMLLSLAIMLLGGVSFGLLPVAPLPQMDFPVIVVSANLSGASPEVMASTVATPL 67

Query: 68   EDALNAIGGLDEVTSTSYEGRSVVVAKFKLEVQSSAAAQEVRDKIAAIEANFPEDTKK-P 126
            E  L +I G+  +TS+S +G + VV  F+L      AA+EV+  I A     P   +  P
Sbjct: 68   ERKLGSIAGVTTLTSSSNQGSTRVVIGFELGRDIDGAAREVQAAINATRNLLPSGMRSMP 127

Query: 127  VISRFDPAAEPILSLAISSTSLDVPALATLAEQKVVRQLTTVAGIGQATLVGGRKRQIDV 186
               + +P+  PI+ L+++S  L    L  LA+  + + L  V+G+G+  + G     + +
Sbjct: 128  TYKKINPSQAPIMVLSLTSDVLQKGQLYDLADTILSQSLAQVSGVGEVQIGGSSLPAVRI 187

Query: 187  TIDETRMRALGIGVNEVVTALRAGNSNSPAGSVVDPVSERTIQIQSRIEEPEALLDMVVA 246
             ++   +    + ++EV TA+   N   P G V D      ++   ++E  +    +V+ 
Sbjct: 188  AVEPQLLNQYNLSLDEVRTAVSNANQRRPMGFVEDAERNWQVRANDQLESAKDYEPVVIR 247

Query: 247  RRGGVAILLRDVATLSEGAADAENRAIYNGQTALAIDIVKVQDANTVQVVSDVRKRLDAL 306
            ++ G  + L DVAT+++G  +  N   +N Q A+ + + +   AN ++ V  ++ +L AL
Sbjct: 248  QQNGTILRLSDVATVTDGVENRYNSGFFNDQAAVLLVVNRQTGANIIETVDQIKAQLPAL 307

Query: 307  NAELSPQNIQLRIVTDSSIPIQESVTQVQTTLIEGAALAVAIVFLFLNSWRSTVITGLTL 366
             + L P ++QL +  D S  I+ ++ + + TL+    L + +V+LFL S R+++I  L +
Sbjct: 308  QS-LLPASVQLNVAMDRSPVIKATLKEAEHTLLIAVVLVILVVYLFLGSLRASLIPSLAV 366

Query: 367  PIAIIGTLTVVDFLGFTLNTLSLLALTLSIGILVDDAIVVRENITRHLHMGKSHLRAALD 426
            P++++GT  V+   GF+LN LSL+AL L+ G++VDDAIVV ENI+RH+  G+  ++AA  
Sbjct: 367  PVSLVGTFAVMYVCGFSLNNLSLMALILATGLVVDDAIVVLENISRHIENGQPPMKAAFL 426

Query: 427  GTGEIGLAVIATTATIVAVFLPVAFMDGIVGRFFYQFGVTVSAAVLISLFVAFTLDPMLS 486
            G  E+G  +++   ++VAVF+ + FM GIV   F +F +T++AA+++SL V+ TL PML 
Sbjct: 427  GAKEVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLAAAIIVSLVVSLTLTPMLC 486

Query: 487  SVWYDPDAQADAKRGPIGRLIARFDHGFEWMAGQYRHAIDWTLRHR---LVTLLVTAGIF 543
            + W  P  QA+       RL    D   + M   Y H++ W LRH+   L++LL T GI 
Sbjct: 487  ARWLKPQ-QAEQT-----RLQRWSDTLHQRMVAAYDHSLGWALRHKRLTLLSLLATIGIN 540

Query: 544  IGSLFMVPLVGTEFVPDADEGRFQINLTAPVGSSLDYTTAKLQQVKKALREFPEVEMLYS 603
            I    +VP      +P  D G+    +    G S      K++  ++AL   P V+ +  
Sbjct: 541  IALYVVVP---KTLMPQQDTGQLMGFIRGDDGLSFTVMQPKMEIYRRALLADPAVQSVAG 597

Query: 604  TINTGGAAGKHRAAILVGLVPLSAREQTPLSLAEPVRKRLSAIPGIEINILQN---GLGG 660
             I  GG +G + A +LV L P+S R+     + E +RK L  +PG  + ++ +    LGG
Sbjct: 598  FI--GGNSGTNNAFVLVRLKPISERKIDAQKVIERLRKELPKVPGGRLFLMADQDLQLGG 655

Query: 661  G-----ESPVQLSILGDDRAVLEKIANGLVEDMKKIPGLVEVTSSTKDVTSILSVRLKPA 715
            G      S    ++   D A L +    +V  ++ +P L  + +     T  +++ +   
Sbjct: 656  GGRDQTSSQYLYTLQSGDLAALREWFPKVVAALRALPELTAIDARDGAGTQQVTLVVDRD 715

Query: 716  AASDLGIARADLAAALSALIGGEDVSKWTDAHGNSYDIVVRLPVERRSDAARLGELMITT 775
             A  LGI    + A L+       +S   D+  N Y +V+ +  +   D + L ++ + T
Sbjct: 716  QAKRLGIDMDMVTAVLNNAYSQRQISTIYDSL-NQYQVVLEINPKYAWDPSTLEQVQVIT 774

Query: 776  GRTGANGAPLMVRLDQVADIGTVAAPAEIRRFDNRREILVSANIT-GRTLGDVTETLQGL 834
                A+GA   V L  +A      A   +          ++ ++  G +       L+  
Sbjct: 775  ----ADGA--RVPLSTIAHYENSLANDRVSHEGQFASEDIAFDVAEGYSPDQAMAALERA 828

Query: 835  TASRDLPAGYRIRFGGEAETMQETVGHMGTALSMAIIFIYIVLASQFGSFLQPLAIMVSL 894
             A   LP     + GG A+   +T       +  A++ +Y+VL   + S++ PL I+ +L
Sbjct: 829  VAKLGLPEEVIAKLGGTADAFAQTQQGQPFMILGALLLVYLVLGILYESYIHPLTILSTL 888

Query: 895  PLSLIGVLLGLMVAGSTINMFSLIGFIMLMGLVTKNGILLVDFA-NRERRRGLTLNEALA 953
            P + +G LL L V G   ++ SL+G  +L+G+V KN IL++D A   ER +G +  E++ 
Sbjct: 889  PSAGVGALLALYVTGGEFSLISLLGLFLLIGVVKKNAILMIDLALQLERHQGFSPEESIR 948

Query: 954  NAGVIRFRPIIMTTLAMIFGMIPLGLAVGGGGAQRAPMAHAVVGGLISSTLLTLIVVPVI 1013
             A ++R RPI+MTTLA I G +PL L+   G   R P+   ++GGL+ S +LTL   PV+
Sbjct: 949  RACLLRLRPILMTTLAAILGALPLLLSQAEGAEMRQPLGLTIIGGLVFSQILTLYTTPVV 1008

Query: 1014 LSYIDSITRRFAR 1026
              Y+D +  RF R
Sbjct: 1009 YLYLDRLRHRFNR 1021