Pairwise Alignments

Query, 1048 a.a., AcrB/AcrD/AcrF family protein from Agrobacterium fabrum C58

Subject, 1014 a.a., putative Multidrug efflux RND transporter from Pseudomonas putida KT2440

 Score =  471 bits (1211), Expect = e-136
 Identities = 303/1026 (29%), Positives = 540/1026 (52%), Gaps = 33/1026 (3%)

Query: 1    MFLTRISVNHPVFATMMMVALLVMGAFSLQRLGLDQYPNVDVPVVVVVTSYPGATPETVE 60
            M  T   +  PV A+++ + +L++G  +  +L + QYP ++  ++ V T+YPGA  ET++
Sbjct: 1    MAFTDTFIQRPVLASVVSLLILLLGFQAWNKLQIRQYPQMENALITVTTAYPGANAETIQ 60

Query: 61   MEVTRPVEDALNAIGGLDEVTSTSYEGRSVVVAKFKLEVQSSAAAQEVRDKIAAIEANFP 120
              +T+P++ +L +  G+D +TS S +  S++    ++   S     E+  K   +    P
Sbjct: 61   GYITQPLQQSLASAEGIDYMTSVSRQNFSIISIYARIGADSDRLFTELLAKANEVRNKLP 120

Query: 121  EDTKKPVISRFDPAAEPILSLAISSTSLDVPALATLAEQKVVRQLTTVAGIGQATLVGGR 180
            +D++ PV+S+    A  ++ ++  S  +  P +     + +  +L T+ G+ +A ++G +
Sbjct: 121  QDSEDPVLSKEAADASALMYVSFYSKEMSNPQITDYLSRVIQPKLATLPGMAEAEILGNQ 180

Query: 181  KRQIDVTIDETRMRALGIGVNEVVTALRAGNSNSPAGSVVDPVSERTIQIQSRIEEPEAL 240
               + + +D  ++   G+   +V  A+R  N  S AG V       ++   + ++  EA 
Sbjct: 181  VFAMRLWLDPVKLAGFGLSATDVTNAVRRYNFLSAAGEVKGEYVVTSVNASTELKSAEAF 240

Query: 241  LDMVVARRGGVAILLRDVATLSEGAADAENRAIYNGQTALAIDIVKVQDANTVQVVSDVR 300
              + +   G   +LL DVA +  GA + +  + ++G  ++ I I     AN + V+ +VR
Sbjct: 241  AALPLKTSGDSRVLLGDVARVEMGAENYDTVSSFDGTPSVYIGIKATPAANPLDVIKEVR 300

Query: 301  KRLDALNAELSPQNIQLRIVTDSSIPIQESVTQVQTTLIEGAALAVAIVFLFLNSWRSTV 360
            + +  L ++L P  + + I  D++  IQ S+ +V  TL E   + + +VFLFL + RS +
Sbjct: 301  RIMPELESQL-PSALNVSIAYDATRFIQASIDEVIKTLGEAVLIVIVVVFLFLGALRSVL 359

Query: 361  ITGLTLPIAIIGTLTVVDFLGFTLNTLSLLALTLSIGILVDDAIVVRENITRHLHMGKSH 420
            I  +T+P+++IG L  +  +G++LN L+LLA+ L+IG++VDDAIVV ENI RH+  GKS 
Sbjct: 360  IPVVTIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVVENIHRHMEEGKSP 419

Query: 421  LRAALDGTGEIGLAVIATTATIVAVFLPVAFMDGIVGRFFYQFGVTVSAAVLISLFVAFT 480
              AAL+G  EI + V++ T T+ AV+ P+ F+ G+ G  F +F +T++ AV+IS  VA T
Sbjct: 420  FDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVIISGIVALT 479

Query: 481  LDPMLSSVWYDPDAQADAKRGPIGRLIARFDHGFEWMAGQYRHAIDWTLRHRLVTLLVTA 540
            L PM+ ++          ++ P G L  R D  FE + G+Y+  +  TL  R V L+   
Sbjct: 480  LSPMMCAL------LLRREQNPSG-LAHRLDQLFERLKGRYQRLLHATLDSRPVVLVFAV 532

Query: 541  GIFIGSLFMVPLVGTEFVPDADEGRFQINLTAPVGSSLDYTTAKLQQVKKALREFPEVEM 600
             I      ++     E  P+ D+G   +  ++P  ++LDY  A   Q     + FPE   
Sbjct: 533  IILCLIPVLLKFTQNELAPNEDQGVIFMMSSSPQPANLDYLNAYTDQFTPLFKAFPE--- 589

Query: 601  LYSTINTGGAAGKHRAAILVGLVPLSAREQTPLSLAEPVRKRLSAIPGIEI--NILQNGL 658
             YS+    G  G         L P + RE+T + L   V+ +L  I G++I    L +  
Sbjct: 590  YYSSFQINGFNGVQTGIGGFLLKPWNERERTQMELLPLVQAKLEEISGLQIFGFNLPSLP 649

Query: 659  GGGES-PVQ--LSILGDDRAVL---EKIANGLVEDMKKIPGLVEVTSSTKDVTSILSVRL 712
            G GE  P Q  ++  GD  A+L   ++I     E  K     +++     +V     V +
Sbjct: 650  GTGEGLPFQFVINTAGDYPALLDVAQRIKTRAQESGKFAFLDIDLAFDKPEVV----VDI 705

Query: 713  KPAAASDLGIARADLAAALSALIGGEDVSKWTDAHGNSYDIVVRLPVERRSDAARLGELM 772
              A A+ +G++   L   L+ L+G  +++++T   G SY ++ ++    R +   L    
Sbjct: 706  DRAKAAQMGVSMDTLGGTLATLLGEAEINRFT-LEGRSYKVIAQVERPYRDNPGWLNNYY 764

Query: 773  ITTGRTGANGAPLMVRLDQVADIGTVAAPAEIRRFDNRREILVSANITGRTLGDVTETLQ 832
            +       N    ++ L  +  +   A P ++ +F      ++   +   +LG+  +T+Q
Sbjct: 765  V------KNDQGQLLPLSTLITLTDRARPRQLNQFQQLNAAIIQ-GVPMVSLGEALKTVQ 817

Query: 833  GLTASRDLPAGYRIRFGGEAETMQETVGHMGTALSMAIIFIYIVLASQFGSFLQPLAIMV 892
             + A  + P G+   + G A    +    +     +A+  I++VLA+QF SF  PL I+V
Sbjct: 818  DI-AREEAPEGFAFDYAGAARQYVQEGSALWVTFGLALAIIFLVLAAQFESFRDPLVILV 876

Query: 893  SLPLSLIGVLLGLMVAGSTINMFSLIGFIMLMGLVTKNGILLVDFANRER-RRGLTLNEA 951
            ++PLS+ G LL L +  S++N+++ +G + L+GL++K+GIL+V+FAN+ R  RGL++ EA
Sbjct: 877  TVPLSICGALLPLFLGVSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRDERGLSVREA 936

Query: 952  LANAGVIRFRPIIMTTLAMIFGMIPLGLAVGGGGAQRAPMAHAVVGGLISSTLLTLIVVP 1011
            +  A  IR RP++MTT AM+FGM+PL LA G G   R  +   +  G+   TL TL V+P
Sbjct: 937  IEEAAAIRLRPVLMTTAAMVFGMVPLILASGAGAVSRFDIGMVIATGMSIGTLFTLFVLP 996

Query: 1012 VILSYI 1017
             I + +
Sbjct: 997  CIYTLL 1002